Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           29   5.1  
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)                 29   5.1  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  

>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 702 KLTPCVMETYNLMFIGSDNHHMH 770
           K +PCV  T  L+++GS +HH++
Sbjct: 865 KSSPCVDPTTGLVWVGSHDHHLY 887


>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
          Length = 637

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/77 (20%), Positives = 36/77 (46%)
 Frame = -1

Query: 540 VRHFISTLNANVTNLGEYYYHTK**ATFFLGSMQCVLIFHSGLSYSLTQSMAFYTSTFSH 361
           ++  I + +  +TN+G  +      +   L  M C  + +SG++    +         S+
Sbjct: 413 LKSLILSSHPELTNVGIKHITNNLKSLTSLDLMDCCRVTNSGVALIAKEMPQLVQLNLSY 472

Query: 360 YYLLSNSGSLSQMIILF 310
            Y +SN G +S ++++F
Sbjct: 473 CYKVSNQGIMSPVLVIF 489


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 31  SVYFAILLKNY-IHNIIWWLFHINLLL 108
           ++YF  L + Y ++ +I WLF++ LLL
Sbjct: 528 NLYFLTLCRKYGVYTVIKWLFYVKLLL 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,473,164
Number of Sequences: 59808
Number of extensions: 497440
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)