Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127092-1|BAC86823.1|  153|Homo sapiens protein ( Homo sapiens ...    32   3.2  

>AK127092-1|BAC86823.1|  153|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45149 fis, clone BRAWH3042132. ).
          Length = 153

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +3

Query: 645 PCVAFTS*PISPKELSTQFKLTPCVMETYNLMFIGSDNH--HMHNY*SYVHRAFIN--YL 812
           PC  F S  +S   LS Q K      E  N    GS NH  H HNY ++ HR F N   L
Sbjct: 62  PCFPFISVSVSGYVLS-QGKFREMCTEFNN----GSLNHSNHWHNYKNFPHRGFQNRSSL 116

Query: 813 IKLLILC---FISLIWYLY 860
            + L  C   +I++  Y+Y
Sbjct: 117 TRFLHACVYTYINIYIYIY 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,898,125
Number of Sequences: 237096
Number of extensions: 2406798
Number of successful extensions: 2960
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2960
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)