Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011041-1|AAR31112.1|  517|Drosophila melanogaster SD19826p pro...    29   6.5  
AY060663-1|AAL28211.1|  517|Drosophila melanogaster GH08870p pro...    29   6.5  
AE014297-4069|AAF56667.1|  517|Drosophila melanogaster CG6070-PA...    29   6.5  

>BT011041-1|AAR31112.1|  517|Drosophila melanogaster SD19826p
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 717 VMETYNLMFIGSDNHHMHNY*SYVHRAFINYLIKLLILCFISLI 848
           +M +  + F+G+ N HM    S++       L  L+ LCF+S++
Sbjct: 351 IMTSSRICFVGARNGHMPAILSHISVKSYTPLPSLVFLCFLSIV 394


>AY060663-1|AAL28211.1|  517|Drosophila melanogaster GH08870p
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 717 VMETYNLMFIGSDNHHMHNY*SYVHRAFINYLIKLLILCFISLI 848
           +M +  + F+G+ N HM    S++       L  L+ LCF+S++
Sbjct: 351 IMTSSRICFVGARNGHMPAILSHISVKSYTPLPSLVFLCFLSIV 394


>AE014297-4069|AAF56667.1|  517|Drosophila melanogaster CG6070-PA
           protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 717 VMETYNLMFIGSDNHHMHNY*SYVHRAFINYLIKLLILCFISLI 848
           +M +  + F+G+ N HM    S++       L  L+ LCF+S++
Sbjct: 351 IMTSSRICFVGARNGHMPAILSHISVKSYTPLPSLVFLCFLSIV 394


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,817,532
Number of Sequences: 53049
Number of extensions: 729677
Number of successful extensions: 1176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)