Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-5|AAT81199.1|  365|Caenorhabditis elegans Serpin protein ...    29   4.5  
U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    29   4.5  
AY525085-1|AAS13533.1|  365|Caenorhabditis elegans serine or cys...    29   4.5  
Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>U50301-5|AAT81199.1|  365|Caenorhabditis elegans Serpin protein 7,
           isoform c protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 779 SVVVHMVVIRADKH*IICFHDTRCKFELCRQLLRRN 672
           S V H  +I  D+   +    TRC  E CR+ ++ N
Sbjct: 303 SKVTHKALIEVDEDGTVAVAATRCSIERCRKKMKEN 338


>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +3

Query: 780 SYVHRAFINYLIKLLILCFISLIWYLYNIISFKKSRVYT 896
           S V ++F+ Y I L+IL     IW   NII  KK  VYT
Sbjct: 150 SQVWKSFMKYAIALVILTPFLFIW---NIIISKKLPVYT 185


>AY525085-1|AAS13533.1|  365|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 365

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 779 SVVVHMVVIRADKH*IICFHDTRCKFELCRQLLRRN 672
           S V H  +I  D+   +    TRC  E CR+ ++ N
Sbjct: 303 SKVTHKALIEVDEDGTVAVAATRCSIERCRKKMKEN 338


>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 393 SMAFYTSTFSHYYLLSNSGSL 331
           S A YT+T  H+Y +SN GS+
Sbjct: 97  SDAVYTATNEHFYFISNGGSI 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,376
Number of Sequences: 27780
Number of extensions: 403076
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)