Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1514
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   2.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   2.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   5.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 108 NYCSRIAHILLLNSVF 155
           N CSR+  ILL+++VF
Sbjct: 3   NICSRLGRILLISAVF 18


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 748 PINIKLYVSMTQGVSLNCVDSSLGE 674
           P N  L++S  + +SLN +D  L E
Sbjct: 178 PFNPVLFISSLENISLNGIDPELTE 202


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 748 PINIKLYVSMTQGVSLNCVDSSLGE 674
           P N  L++S  + +SLN +D  L E
Sbjct: 216 PFNPVLFISSLENISLNGIDPELTE 240


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 15  NNFSLKCLFCDIAKKLYS*YNLV-AVPYQLAVNYC 116
           NN + K L+C+  KKLY   N +  +P  + + YC
Sbjct: 92  NNNNYKKLYCNNYKKLYYNINYIEQIPIPVPI-YC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 15  NNFSLKCLFCDIAKKLYS*YNLV-AVPYQLAVNYC 116
           NN + K L+C+  KKLY   N +  +P  + + YC
Sbjct: 92  NNNNYKKLYCNNYKKLYYNINYIEQIPIPVPI-YC 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 15  NNFSLKCLFCDIAKKLYS*YNLV-AVPYQLAVNYC 116
           NN + K L+C+  +KLY   N +  +P  + + YC
Sbjct: 92  NNNNYKKLYCNNYRKLYYNINYIEQIPIPVPI-YC 125


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 398 VKEYDRPEWKMRTHCIDPKKKVAYYFV 478
           ++EY+ PE+K+     D +    YY++
Sbjct: 211 MREYNDPEYKLDYFMEDVELNAYYYYM 237


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 398 VKEYDRPEWKMRTHCIDPKKKVAYYFV 478
           ++EY+ PE+K+     D +    YY++
Sbjct: 211 MREYNDPEYKLDYFMEDVELNAYYYYM 237


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 705 LTPCVMETYNLMFIGSDNHHMHNY*SYVHRAFINYLIKLLIL 830
           +T CV+   N+ F     H+M     +V + F+N++ +LL++
Sbjct: 329 ITVCVL---NVHFRSPSTHNMS---PWVRQVFLNWMPRLLMM 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,657
Number of Sequences: 438
Number of extensions: 4909
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)