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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1513
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.7  
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    25   8.9  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    25   8.9  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    25   8.9  
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    25   8.9  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    25   8.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   8.9  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    25   8.9  
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    25   8.9  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.9  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   8.9  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    25   8.9  
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    25   8.9  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   8.9  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    25   8.9  
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    25   8.9  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    25   8.9  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 294  YLASKAYMHTYGENPVWLL 350
            YLA   ++H +G+NP W L
Sbjct: 1474 YLARSQFLHHFGKNPSWWL 1492


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 100 FLKLKKMALFSVLRLRLNKTLPDLRSSLRFYCSSTDNGPNES 225
           ++ LKK  L + L+ R++K    +  +LRF  +  +N  NE+
Sbjct: 638 WVTLKKHRLLARLKSRISKKNSKVNENLRFSLNDGENYSNET 679


>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 206 SVDEQ*NRRDDLKSGRVLFNLKRSTLNSAIFFN 108
           SV    +  D+L   R L+NL R+ LNS  + N
Sbjct: 30  SVQSSFHSYDELAFSRRLYNLPRTLLNSRYYSN 62


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 719 YSKLKHCYSNYINSGGMQYFCYKLNNHIL 633
           Y+K+     NY N   ++YFC   + +++
Sbjct: 187 YTKMSFSIKNYYNGQPLRYFCKTRDGNVI 215


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 484 LSYFNNSFQLYWTDFT-TFKDR 546
           L YF +S   Y+T FT +FKDR
Sbjct: 125 LEYFGHSLFFYFTAFTLSFKDR 146


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 432 NPCPICRDEYLVLD 473
           N CP+CR E+L +D
Sbjct: 73  NTCPLCRTEFLKVD 86


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 49  EVIKKEISLK*VNIKT*FLKLKKMALFSVLRLRLNKTLPDLRSSLRFY 192
           E I KEIS   +N+    ++L     +  LRL L K+L ++  S R Y
Sbjct: 330 ESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLY 377


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 37  KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
           K   + IK  ISL  ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,751
Number of Sequences: 5004
Number of extensions: 63616
Number of successful extensions: 185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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