Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1513
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 6.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.9
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 8.9
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|... 25 8.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.9
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.9
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 8.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.9
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.9
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 294 YLASKAYMHTYGENPVWLL 350
YLA ++H +G+NP W L
Sbjct: 1474 YLARSQFLHHFGKNPSWWL 1492
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 100 FLKLKKMALFSVLRLRLNKTLPDLRSSLRFYCSSTDNGPNES 225
++ LKK L + L+ R++K + +LRF + +N NE+
Sbjct: 638 WVTLKKHRLLARLKSRISKKNSKVNENLRFSLNDGENYSNET 679
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 206 SVDEQ*NRRDDLKSGRVLFNLKRSTLNSAIFFN 108
SV + D+L R L+NL R+ LNS + N
Sbjct: 30 SVQSSFHSYDELAFSRRLYNLPRTLLNSRYYSN 62
>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 719 YSKLKHCYSNYINSGGMQYFCYKLNNHIL 633
Y+K+ NY N ++YFC + +++
Sbjct: 187 YTKMSFSIKNYYNGQPLRYFCKTRDGNVI 215
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 484 LSYFNNSFQLYWTDFT-TFKDR 546
L YF +S Y+T FT +FKDR
Sbjct: 125 LEYFGHSLFFYFTAFTLSFKDR 146
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 432 NPCPICRDEYLVLD 473
N CP+CR E+L +D
Sbjct: 73 NTCPLCRTEFLKVD 86
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 49 EVIKKEISLK*VNIKT*FLKLKKMALFSVLRLRLNKTLPDLRSSLRFY 192
E I KEIS +N+ ++L + LRL L K+L ++ S R Y
Sbjct: 330 ESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLY 377
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,751
Number of Sequences: 5004
Number of extensions: 63616
Number of successful extensions: 185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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