BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1513 (758 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.2 SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 6.7 SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.9 SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.9 SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.9 SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.9 SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.9 SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 8.9 SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|... 25 8.9 SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.9 SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.9 SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 8.9 SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.9 SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.9 SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.9 SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.9 SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.9 SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.9 >SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1562 Score = 27.5 bits (58), Expect = 2.2 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 294 YLASKAYMHTYGENPVWLL 350 YLA ++H +G+NP W L Sbjct: 1474 YLARSQFLHHFGKNPSWWL 1492 >SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1639 Score = 25.8 bits (54), Expect = 6.7 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +1 Query: 100 FLKLKKMALFSVLRLRLNKTLPDLRSSLRFYCSSTDNGPNES 225 ++ LKK L + L+ R++K + +LRF + +N NE+ Sbjct: 638 WVTLKKHRLLARLKSRISKKNSKVNENLRFSLNDGENYSNET 679 >SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 206 SVDEQ*NRRDDLKSGRVLFNLKRSTLNSAIFFN 108 SV + D+L R L+NL R+ LNS + N Sbjct: 30 SVQSSFHSYDELAFSRRLYNLPRTLLNSRYYSN 62 >SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 222 Score = 25.4 bits (53), Expect = 8.9 Identities = 8/29 (27%), Positives = 16/29 (55%) Frame = -1 Query: 719 YSKLKHCYSNYINSGGMQYFCYKLNNHIL 633 Y+K+ NY N ++YFC + +++ Sbjct: 187 YTKMSFSIKNYYNGQPLRYFCKTRDGNVI 215 >SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 182 Score = 25.4 bits (53), Expect = 8.9 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = +1 Query: 484 LSYFNNSFQLYWTDFT-TFKDR 546 L YF +S Y+T FT +FKDR Sbjct: 125 LEYFGHSLFFYFTAFTLSFKDR 146 >SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 571 Score = 25.4 bits (53), Expect = 8.9 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = +3 Query: 432 NPCPICRDEYLVLD 473 N CP+CR E+L +D Sbjct: 73 NTCPLCRTEFLKVD 86 >SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces pombe|chr 3|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 528 Score = 25.4 bits (53), Expect = 8.9 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +1 Query: 49 EVIKKEISLK*VNIKT*FLKLKKMALFSVLRLRLNKTLPDLRSSLRFY 192 E I KEIS +N+ ++L + LRL L K+L ++ S R Y Sbjct: 330 ESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLY 377 >SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 >SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 37 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 123 K + IK ISL ++IKT FL +KK + Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,003,751 Number of Sequences: 5004 Number of extensions: 63616 Number of successful extensions: 185 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 185 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 363302114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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