Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1513
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142...    30   2.3  
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78...    28   9.3  

>05_01_0197 -
           1417672-1417899,1418921-1418974,1419267-1419552,
           1421768-1422291
          Length = 363

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 438 CPICRDEYLVLDHRNTKLLQQFISIILDRFYNLQRQAYARKNTKNSWLLLK 590
           C ICRDE L  +     L       + ++F+    + Y R   KN W  LK
Sbjct: 308 CEICRDEVLAGNRPTAALSPLGYKNLEEKFFAQTGRQYDRTKLKNRWDTLK 358


>10_01_0055 -
           785172-785997,786859-787394,787478-787695,787789-787891,
           788723-788770
          Length = 576

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 552 ARKNTKNSW-LLLKELGTKVCLHMMYHS-EYMIIQFITKVLHPTRIDVIR 695
           A K++  +W      LG + C +M Y      ++ F+T VLH +++D  R
Sbjct: 35  ALKHSTGNWRACFLILGVEFCENMTYFVISRNLVTFLTTVLHESKVDAAR 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492,305
Number of Sequences: 37544
Number of extensions: 352019
Number of successful extensions: 946
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)