Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1513
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_156| Best HMM Match : MORN (HMM E-Value=5.9e-18)                    31   1.3  
SB_24716| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_10749| Best HMM Match : DB (HMM E-Value=1.5)                        28   9.5  

>SB_156| Best HMM Match : MORN (HMM E-Value=5.9e-18)
          Length = 653

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 312 YMHTYGENPVWLLYRRNHKGGIPPRK-TRKSCVRNGMISTGNPCPICRDEYLVLDHRNTK 488
           Y+   GE+ +   YR  + G  P  K  RK   RN  I    P PI RD  LV  H  T 
Sbjct: 479 YVFAKGESNIGWFYRDEYVGKEPNEKLRRKMKKRNMSIDEEGPDPIPRDSSLV--HTETT 536

Query: 489 LLQ 497
            +Q
Sbjct: 537 NIQ 539


>SB_24716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 894

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 244 DPTKTGPKLFQSNKV*DIWQVKRICIPTVKIQCGYYIGVIIKVVYLLEKQGNLVLETG 417
           DPT+TG  L     + D W +   C  TV I C   +GV   V++++  +  LV  +G
Sbjct: 566 DPTRTGCVLLPLRYLSDSWSIMVTCFATVGIIC--VLGV--SVIFIMFSETPLVKASG 619


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 214  PNESDEQPAVDPTKTGPKLFQS---NKV*DIWQVKR 312
            P  SD++  ++P   GPK+FQ+    +  ++W++++
Sbjct: 2372 PEFSDDEEEMEPVNMGPKVFQTWCPEEKLELWEIRQ 2407


>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
          Length = 616

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 584 IERAWDQGLLTYDV-PFRVYDYSVYNKS 664
           +E+A   GL+  DV PFR  DY +YN +
Sbjct: 155 VEQAAKAGLILMDVLPFRGSDYPIYNSA 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,070,898
Number of Sequences: 59808
Number of extensions: 430555
Number of successful extensions: 1156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)