Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1513
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX248507-3|CAI18569.1| 258|Homo sapiens mitochondrial ribosomal... 104 4e-22
BX119957-6|CAM25911.1| 258|Homo sapiens mitochondrial ribosomal... 104 4e-22
BC005373-1|AAH05373.1| 258|Homo sapiens mitochondrial ribosomal... 104 4e-22
AL845353-9|CAI41878.1| 258|Homo sapiens mitochondrial ribosomal... 104 4e-22
AL732442-19|CAI17765.1| 258|Homo sapiens mitochondrial ribosoma... 104 4e-22
AL662825-11|CAI17840.1| 258|Homo sapiens mitochondrial ribosoma... 104 4e-22
AL662800-10|CAI18162.2| 258|Homo sapiens mitochondrial ribosoma... 104 4e-22
AF100761-1|AAD43025.1| 258|Homo sapiens PTD017 protein. 104 4e-22
AB202094-2|BAE78614.1| 258|Homo sapiens mitochondrial ribosomal... 104 4e-22
AB110934-1|BAD13700.1| 258|Homo sapiens MRPS18B protein protein. 104 4e-22
AB110933-1|BAD13699.1| 258|Homo sapiens MRPS18B protein protein. 104 4e-22
BX248507-2|CAM25772.1| 215|Homo sapiens mitochondrial ribosomal... 64 5e-10
BX119957-7|CAM25910.1| 215|Homo sapiens mitochondrial ribosomal... 64 5e-10
AL732442-18|CAI17764.2| 215|Homo sapiens mitochondrial ribosoma... 64 5e-10
AL662825-10|CAI17839.2| 215|Homo sapiens mitochondrial ribosoma... 64 5e-10
AL662800-11|CAI18161.2| 215|Homo sapiens mitochondrial ribosoma... 64 5e-10
BC005186-1|AAH05186.1| 142|Homo sapiens mitochondrial ribosomal... 35 0.37
AF151892-1|AAD34129.1| 142|Homo sapiens CGI-134 protein protein. 35 0.37
AK074712-1|BAC11155.1| 314|Homo sapiens protein ( Homo sapiens ... 30 7.9
AB011115-1|BAA25469.1| 1111|Homo sapiens KIAA0543 protein protein. 30 7.9
>BX248507-3|CAI18569.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>BX119957-6|CAM25911.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>BC005373-1|AAH05373.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AL845353-9|CAI41878.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AL732442-19|CAI17765.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AL662825-11|CAI17840.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AL662800-10|CAI18162.2| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AF100761-1|AAD43025.1| 258|Homo sapiens PTD017 protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AB202094-2|BAE78614.1| 258|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AB110934-1|BAD13700.1| 258|Homo sapiens MRPS18B protein protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>AB110933-1|BAD13699.1| 258|Homo sapiens MRPS18B protein protein.
Length = 258
Score = 104 bits (249), Expect = 4e-22
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDE 458
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+R + GNPCPICRD
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDH 111
Query: 459 YLVLDHRNTKLLQQFI 506
L +D RN KLL+QF+
Sbjct: 112 KLHVDFRNVKLLEQFV 127
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVP 628
+TG I TG+C K+HK L AI++A D GLL Y +P
Sbjct: 130 HTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>BX248507-2|CAM25772.1| 215|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 215
Score = 64.1 bits (149), Expect = 5e-10
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCV 407
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCI 95
>BX119957-7|CAM25910.1| 215|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 215
Score = 64.1 bits (149), Expect = 5e-10
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCV 407
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCI 95
>AL732442-18|CAI17764.2| 215|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 215
Score = 64.1 bits (149), Expect = 5e-10
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCV 407
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCI 95
>AL662825-10|CAI17839.2| 215|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 215
Score = 64.1 bits (149), Expect = 5e-10
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCV 407
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCI 95
>AL662800-11|CAI18161.2| 215|Homo sapiens mitochondrial ribosomal
protein S18B protein.
Length = 215
Score = 64.1 bits (149), Expect = 5e-10
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +3
Query: 279 EQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPPRKTRKSCV 407
++ +YL S+ Y YG PVW YRRNHKGG+PP++TRK+C+
Sbjct: 53 DEPWKYLESEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCI 95
>BC005186-1|AAH05186.1| 142|Homo sapiens mitochondrial ribosomal
protein S18C protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.37
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLL--TYDVPFRVYDYSVYN 658
+TG I TGLC KK KE+ AI+RA G + TY P + D V N
Sbjct: 87 FTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKVCN 137
>AF151892-1|AAD34129.1| 142|Homo sapiens CGI-134 protein protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.37
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 512 YTGQILQPSKTGLCQKKHKELLVAIERAWDQGLL--TYDVPFRVYDYSVYN 658
+TG I TGLC KK KE+ AI+RA G + TY P + D V N
Sbjct: 87 FTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKVCN 137
>AK074712-1|BAC11155.1| 314|Homo sapiens protein ( Homo sapiens
cDNA FLJ90231 fis, clone NT2RM2000423, weakly similar to
BETA-GALACTOSIDASE PRECURSOR (EC 3.2.1.23). ).
Length = 314
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 115 KMALFSVLRLRLNKTLPDLRSSLRFYCSSTDNGPNESD 228
KM+ F LR K +PD FYC + GP+ D
Sbjct: 211 KMSFFERLRSATWKPVPDSHQGPAFYCGTLKAGPSPKD 248
>AB011115-1|BAA25469.1| 1111|Homo sapiens KIAA0543 protein protein.
Length = 1111
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 184 RFYCSSTDNGPNESDEQPAVDPTKTGPKLFQSNKV*DIWQVKRICIPTVKIQ 339
+ +CS+ PN D+ + TGP ++ K ++ + R+C+ TV+I+
Sbjct: 426 KLFCSACIERPNLHDKSSRLVRGYTGPFKVETLKYHEVSKAHRLCVNTVEIK 477
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,182,574
Number of Sequences: 237096
Number of extensions: 2086410
Number of successful extensions: 7896
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7885
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -