Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1513
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical pr...    63   2e-10
U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z35719-5|CAE45044.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z74039-5|CAA98504.1|  479|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z50016-8|CAA90315.1|  393|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical
           protein T13H5.5 protein.
          Length = 238

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
 Frame = +3

Query: 276 VEQSLRYLASKAYMHTYGENPVWLLYRRNHKGGI---PPRKTRKSCV-RNGMISTGNPCP 443
           + + + Y+ S+ Y   Y   P++  Y+RN KG     PP   R  C+ ++G  +  + CP
Sbjct: 54  IAEQISYMKSRGYAEAYKGLPIYRWYKRNIKGQSKLQPP--PRLFCIDKHGRFNLNHACP 111

Query: 444 ICRDEYLVLDHRNTKLLQQFISIILDRFYNLQRQAYARKN---TKNSWLLLKELGT 602
           +CRDEYL  D+RN  L++QF++   D+  ++ +    R+     +   L  KE GT
Sbjct: 112 VCRDEYLYFDYRNPGLIEQFLADGTDQPIDILKSGLCREQYTLLRAQLLKAKEHGT 167



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 515 TGQILQPSKTGLCQKKHKELLVAIERAWDQGLLTYDVPFRVYDYSVYNKS 664
           T Q +   K+GLC++++  L   + +A + G +T+ V FR +DY  + KS
Sbjct: 136 TDQPIDILKSGLCREQYTLLRAQLLKAKEHGTITFGVEFRNFDYRQWYKS 185


>U50191-9|AAK31558.1|  139|Caenorhabditis elegans Hypothetical
           protein T14B4.2 protein.
          Length = 139

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 468 LDHRNTKLLQQFISIILDRFYNLQRQAYARKNTK 569
           LD++N++LLQQF+S    R Y+        +N K
Sbjct: 63  LDYKNSRLLQQFVSTFSGRVYDRHITGLCDENKK 96


>Z35719-5|CAE45044.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.7 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 109 LKKMALFSVLR-LRLNKTLPDLRSSLRFYCSSTDNGPNESDEQPAVDPTKTGPKLFQSNK 285
           L K+A  SVL+ + L+ +     S   F+CSST+  P ++   P      TG ++ Q N 
Sbjct: 9   LSKIAEISVLKSVILDFSNLKTNSDCPFFCSSTNKMPCQTKSNPTELHISTGREIVQRNF 68

Query: 286 V 288
           V
Sbjct: 69  V 69


>Z74039-5|CAA98504.1|  479|Caenorhabditis elegans Hypothetical
           protein K03B8.5 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 173 LKSGRVLFNLKRSTLNSAIFFNFRNY-VLMLTYFKLISFF 57
           LK  R+L  +K S L   ++F+ +NY +L +++  L+ +F
Sbjct: 3   LKIFRLLLEIKSSILKICVYFSSKNYGILSISFAFLLIYF 42


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 438 CPICRDEYLVLDHRNTKLLQQF--ISIILDRFYNLQRQ 545
           CP CR    ++++  TKLL+ F  I +I D  Y+L ++
Sbjct: 47  CPFCRTVTNIVNNDITKLLKNFALIEVIEDARYSLNKK 84


>Z50016-8|CAA90315.1|  393|Caenorhabditis elegans Hypothetical
           protein T21C12.2 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 255 DRTKVIPVEQSLRYLASKAYMHTYGENPVWLLYRRNHKGGIPP 383
           D T+    + S+RY    A + TYGE    LL R+N++G   P
Sbjct: 119 DITEESDADGSIRY----ATLRTYGETDHTLLERKNYRGAFLP 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,626
Number of Sequences: 27780
Number of extensions: 349315
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)