Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1512
         (802 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YDG4 Cluster: Putative uncharacterized protein; n=1; ...    39   0.17 
UniRef50_A5ZQ60 Cluster: Putative uncharacterized protein; n=1; ...    35   2.7  
UniRef50_Q4E7M1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.8  
UniRef50_A0C7T6 Cluster: Chromosome undetermined scaffold_156, w...    33   6.3  

>UniRef50_Q4YDG4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 125

 Score = 38.7 bits (86), Expect = 0.17
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 450 LYCKTFQRVIDMYEIYFAINLKTYFCLHHFFTNA---LVLPLSKITPKPYMYFVSNFNMK 620
           + C  F R+   Y +Y   NL T+F ++ FF+N+   + +P   IT   Y YF+   N K
Sbjct: 57  IICSCFMRMF--YLLYILFNLYTHFIIYFFFSNSYHIIFIPYFYITTFDYAYFI---NRK 111

Query: 621 YHILENNK 644
             + +N K
Sbjct: 112 MRVKKNEK 119


>UniRef50_A5ZQ60 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 310

 Score = 34.7 bits (76), Expect = 2.7
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = +3

Query: 393 YRNVGRSFVALYNLFLNRLLYCKTFQRVIDMYEIYFAINLKTYFCLHHFFTNALVLPLSK 572
           Y      F+ L N+F  R +    F +++        I L  YF  HHF TN   + L  
Sbjct: 210 YLGCSLGFMKLTNIFKYRSILVLVFTKIL-------VIPLIVYFISHHFLTNVESMILML 262

Query: 573 ITPKPYMYFVSNFNMKYHILENNKTSYLI 659
           I+  P M   S    +YH+ E   ++ ++
Sbjct: 263 ISAAPSMTTSSMIAEQYHLDEEYASTAVV 291


>UniRef50_Q4E7M1 Cluster: Putative uncharacterized protein; n=1;
           Wolbachia endosymbiont of Drosophila simulans|Rep:
           Putative uncharacterized protein - Wolbachia
           endosymbiont of Drosophila simulans
          Length = 181

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 160 VNHIYSIALHTFSKIC-LLL*IIYVCMDIIPTTKIIILNL 44
           VNHIY+  +  FS +C L +  +YV   IIPT   ++ NL
Sbjct: 64  VNHIYAPTVSDFSNLCGLSIAALYVIATIIPTPGTVVNNL 103


>UniRef50_A0C7T6 Cluster: Chromosome undetermined scaffold_156,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_156,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 381

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 375 IIICISYRNVGRSFVALYNLFLNRLLYCKTFQRV-IDMYEI 494
           ++  +  + +GRSFV LY  F +R  YC  F+R+   +YE+
Sbjct: 110 VLFHLKKKGLGRSFVELYECFHHRGYYCMIFERLGPSLYEL 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,009,009
Number of Sequences: 1657284
Number of extensions: 12614027
Number of successful extensions: 24849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24840
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)