Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1512
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    27   3.1  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    26   7.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 471 RVIDMYEIYF----AINLKTYFCLHHFFTNALVLPLSKITPKPYMYFVS-NFNMKYHILE 635
           +VID+ E+ F    +    T+F + H FT+A VLP      KPY  F     + KY +L 
Sbjct: 132 QVIDVTEVIFQDFVSATQYTHFPVFHLFTHADVLP----PKKPYWLFPGLGISSKYAMLY 187

Query: 636 NNKTSYLI 659
            + +  L+
Sbjct: 188 TSHSFNLV 195


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 374 LTKIRPQKLLTT*VKSNN--YLQGKSLIKLIRQHSTTKHNFLTSLISSRYLRSTKLLAPI 201
           ++K +   +L    KSNN   + G   + + +  STTK + + + ISS  +++ K    +
Sbjct: 1   MSKRKSSSILDFFKKSNNGKNMWGNEAVSVEKTDSTTKPSTVKNAISSSQIKNEKFSQEV 60

Query: 200 IILLN 186
           ++  N
Sbjct: 61  LLQFN 65


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 543 TNALVLPLSKITPKPYMYFVSNFNMKYHILE 635
           TN +V P  K  P  Y+YFV    M+ H+++
Sbjct: 236 TNLVVRPSCKF-PWTYIYFVECLGMEKHLID 265


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 387 ISYRNVGRSFVALYNLFLNRLL 452
           I+Y ++GR F+A ++L + R+L
Sbjct: 439 ITYPSIGREFLAQFHLVIKRVL 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,269
Number of Sequences: 5004
Number of extensions: 62139
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)