Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1512
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.62 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = +3

Query: 378 IICISYRNVGRSFVALYNLFLNRLLYCKTFQRVIDMY 488
           ++ +  R  G+S + +Y+L  +  +YC+ +++  + Y
Sbjct: 137 VLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETY 173


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 100 IIYVCMDIIPTTKIIILNLSMLIKKKNDIITVQ 2
           I +VC DI  T+ +  L L +      DII  Q
Sbjct: 24  ICFVCKDITSTSALYRLKLYLFCDYDRDIIPEQ 56


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 477  LLVGMFYSIKADLKIDYTKLQSFDLHSY 394
            L+  +FY  +    +D T+ Q+FD   Y
Sbjct: 1432 LINNVFYEDETSCMLDKTRAQTFDGKDY 1459


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 436 NRLYKATKLRPTFLYDMHIII 374
           +RLY+ TK+   FL+ M  II
Sbjct: 268 DRLYELTKIDKWFLHKMKNII 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,857
Number of Sequences: 438
Number of extensions: 4820
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)