Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1510
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    47   4e-06
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   4.4  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   4.4  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   7.6  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +3

Query: 516 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPK--SQVKEYPHAVGRKTVLIAALQARN 689
           P+L++G G  +   N    PIL  + T+Y YN K  ++V + P A G +  L++ LQ+  
Sbjct: 166 PILYKGIGHYLGP-NPQTQPILRGNPTSYIYNTKTEAEVSKNPWAAGTQLFLVSVLQSST 224

Query: 690 NARIVFSGSLFFFSDE 737
             R+  SGS+    DE
Sbjct: 225 GERVGLSGSIDMLKDE 240



 Score = 32.3 bits (70), Expect = 0.088
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 116 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFA 241
           +S F +SL +R + +      D +  L +YGE LY NLI+ +
Sbjct: 35  YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLS 76


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 654 KTVL-IAALQARNNARIVFSGSLFFFSDEAFNSPVTKDMVTKQSQMYQATRFSRFALLNG 830
           KT L + +L  RNN  I  S S+      +FN+  T ++ T+    ++     R + L G
Sbjct: 274 KTSLKLYSLAQRNNHTITTSNSISLSLVSSFNTEATSNLYTR---FFKIASSFRVSYLMG 330

Query: 831 CLV 839
           CL+
Sbjct: 331 CLL 333


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 59  VCADHETLVLIDNLNIKETHSQFFKSLQERGYGLT-FKL--ADDANLVLSKYGEYLYKNL 229
           VC D E L +IDN   K       +  QE   G + FK    D+   ++S Y   L+ NL
Sbjct: 719 VCNDSEALKIIDNCIDKN-----MQKSQEGFQGPSPFKADENDEDIFIISLYHSSLFLNL 773

Query: 230 IVFAPSVLGLVD 265
             F   ++G +D
Sbjct: 774 KFFVSLIIGFLD 785


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 645 VGRKTVLIAALQARNNARI-VFSGS 716
           +G KT ++AAL A  N+R+ VF+GS
Sbjct: 62  IGDKTFIVAALLAFENSRLTVFAGS 86


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 255 PSTEGANTMRFLYKYSPYFDRTRFASSASLNVKP*PRS 142
           PS++ ++T  F Y    + DR  F+S+ SL  +P PRS
Sbjct: 79  PSSDKSSTSPFPYLKGSFDDR--FSSTHSLTRQPSPRS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,929
Number of Sequences: 5004
Number of extensions: 70588
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)