Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1510
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 79 3e-15
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 34 0.16
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 30 2.6
09_01_0101 - 1558889-1558989,1559105-1559214,1559300-1559396,156... 29 3.5
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 29 4.6
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 29 6.1
01_01_0913 + 7196233-7196389,7196895-7196978,7198064-7198153,719... 29 6.1
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 79.4 bits (187), Expect = 3e-15
Identities = 40/82 (48%), Positives = 52/82 (63%)
Frame = +3
Query: 516 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNA 695
P+LF G G V+ NSLVL +LSA +AYS NPKS++ P G L++ +QARNNA
Sbjct: 183 PVLFRGIGHAVNPSNSLVLKVLSASPSAYSANPKSKLASPPSLTGSAISLVSVMQARNNA 242
Query: 696 RIVFSGSLFFFSDEAFNSPVTK 761
R++ SGSL FS+ S V K
Sbjct: 243 RVLISGSLDLFSNRFLKSGVQK 264
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +2
Query: 80 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 247
LVL+D+L ++ +HS FF SLQ RG+ L F+LADD L L +YG+YLY L++FAPS
Sbjct: 36 LVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPS 91
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 RFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDV 429
RFGG VD +I +FID D+ R IA+ECG + DE+ A VIDH NY
Sbjct: 94 RFGGSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAA 153
Query: 430 TD-EGDHTRIVVSPKNLIKAPTIVGEQ 507
TD EGDHT +++ +LI++ I+G +
Sbjct: 154 TDAEGDHT--LIAGDDLIQSDVILGSK 178
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = -2
Query: 398 ADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNRARKERIL*DSC 219
AD S+++N + A+ P P S+ + + PP + R R++ SC
Sbjct: 524 ADRSNVNNSDATALHTQERPVHTPETTNEIDPKSV--ITSEKENRPPTKQRLRRLIIRSC 581
Query: 218 INILRILTGPDLHH 177
NIL L HH
Sbjct: 582 NNILSWLKNHHRHH 595
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 374 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 255
P +E++ S P+AA P ++ PP ++ V++SLS PPN
Sbjct: 23 PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>09_01_0101 -
1558889-1558989,1559105-1559214,1559300-1559396,
1560462-1560537,1561577-1561666,1561972-1562070
Length = 190
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 561 SLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNARIVFSGSLFFF 728
S V+PI D T +Y +SQ +E K ++ A + N A I F+G F++
Sbjct: 114 STVVPIKRNDGTI-TYQAQSQDEEALVTAASKLNMVLASKDSNTAEISFNGCKFYY 168
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 635 PPCSWP*DSTDCSSASKKQCSYCFQWIVILL 727
PPC +P S DC + +QC + VILL
Sbjct: 577 PPCPFPMHSEDCPYSYTRQCDHDGPIFVILL 607
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 635 PPCSWP*DSTDCSSASKKQCSYCFQWIVILL 727
PPC +P S DC + +QC++ VI+L
Sbjct: 664 PPCPFPSHSEDCPYSYTRQCNHDGPIFVIML 694
>01_01_0913 +
7196233-7196389,7196895-7196978,7198064-7198153,
7199464-7199699,7199787-7199850,7200505-7200643,
7201836-7202022,7202555-7202661,7202985-7203073,
7203432-7203469,7204135-7204152
Length = 402
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 674 SASKKQCSYCFQWIVILLL**GLQFSCYKRHGDKTK 781
S S + C++C +W++ ++L L+ C K+ K K
Sbjct: 75 SHSVQHCAFCVKWVLRMVLNKVLELFCVKKKDSKKK 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,668,969
Number of Sequences: 37544
Number of extensions: 450176
Number of successful extensions: 1267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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