Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1510
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)                   89   3e-18
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   4.7  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   29   6.2  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
          Length = 415

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 40/62 (64%), Positives = 49/62 (79%)
 Frame = +2

Query: 65  ADHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 244
           A   TLVL+DN N KETHS FF SL+ +GY LTF+ ADDA+L L KYGE+LY NL++F+P
Sbjct: 26  AGQRTLVLLDNANTKETHSIFFSSLKAKGYELTFRTADDASLALVKYGEFLYDNLVIFSP 85

Query: 245 SV 250
           SV
Sbjct: 86  SV 87



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/94 (42%), Positives = 52/94 (55%)
 Frame = +1

Query: 256 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVTD 435
           FGG ++  AIT FID              D  RE+ SECG E DEE  AVIDH ++DV+D
Sbjct: 90  FGGSLNVRAITDFIDGGGNVLVAASSAIGDPLRELGSECGVEFDEEKTAVIDHISHDVSD 149

Query: 436 EGDHTRIVVSPKNLIKAPTIVGEQIHSLCYLKAL 537
              HT +V  P N+IKA T+ G+ + S    K +
Sbjct: 150 LDQHTLVVAEPSNVIKADTVTGKTVTSPLLFKGV 183


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = -2

Query: 404 TAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNRARKERIL*D 225
           TA   S+I++PH+  +S  T+PAA  P     P  +       L +  P+      I   
Sbjct: 476 TAQTRSAITSPHAYTVSSVTAPAATSPNGFSGPEVNSPNANTGLKSISPHAEFGPAITPT 535

Query: 224 SCINILRI-----LTGPDLHHPQ 171
              N+L I      +GP++  PQ
Sbjct: 536 HADNLLTINLPSAKSGPEITSPQ 558


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 433 DEGDHTRIVVSPKNLIKAPTIVGEQIHSLC 522
           D+GD    V+SP++L+K+P +    +  LC
Sbjct: 632 DDGDDPMYVISPEDLLKSPDMCKSFLSFLC 661


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = -1

Query: 462  YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 283
            Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 860  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPSVIAWLKARRSHSRF-Y 910

Query: 282  GLTVYLSTKPSTEGANTMRFLYKYSPYFD 196
            G  +Y +++ S +  +      KY PYF+
Sbjct: 911  GGDIYTNSEISRDPCSPWGISKKYYPYFE 939


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,395,359
Number of Sequences: 59808
Number of extensions: 525460
Number of successful extensions: 1131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)