Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1510
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 81 1e-15
Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical pr... 31 1.0
AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein. 31 1.0
Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical p... 30 1.8
Z71262-9|CAA95817.2| 440|Caenorhabditis elegans Hypothetical pr... 30 1.8
AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. 30 1.8
AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. 30 1.8
AY037797-1|AAK94762.1| 412|Caenorhabditis elegans GLY-18 protein. 30 1.8
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 30 2.4
>Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical
protein T09A5.11 protein.
Length = 445
Score = 81.0 bits (191), Expect = 1e-15
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = +3
Query: 516 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNA 695
P+LF+G GL+ K N+L L I+ A TAYSY+PK+ P G +T+L+ LQ+RNNA
Sbjct: 172 PVLFKGIGLVAGKTNNLALSIVRASGTAYSYDPKAVRATNPSIAGSRTLLVGGLQSRNNA 231
Query: 696 RIVFSGSLFFFSDEAFNS 749
RIVF+GS FS+ F++
Sbjct: 232 RIVFTGSSELFSNTFFSA 249
Score = 72.9 bits (171), Expect = 3e-13
Identities = 38/83 (45%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT- 432
FGG + I+KF+D D REIA+E GFE +E +VIDH NYD T
Sbjct: 83 FGGSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTL 142
Query: 433 DEGDHTRIVVSPKNLIKAPTIVG 501
D GDHT +VV LI A IVG
Sbjct: 143 DSGDHTTLVVGKDQLISAELIVG 165
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = +2
Query: 80 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSV 250
LVL + +K+THS F S++ERG+ LT + ADD+ L L K+G+ ++ +L + AP V
Sbjct: 24 LVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAPGV 80
>Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical
protein T15D6.2 protein.
Length = 420
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 432 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
S+ I+ VYDC +FL HLKS + + Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193
>AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein.
Length = 420
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 432 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
S+ I+ VYDC +FL HLKS + + Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193
>Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical
protein F22D6.12 protein.
Length = 436
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 444 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
+S SH I++ VYDC FL HL++ + + Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210
>Z71262-9|CAA95817.2| 440|Caenorhabditis elegans Hypothetical
protein F22D6.11 protein.
Length = 440
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 432 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
SH I+ YDC FL HLKS + + Y+SG
Sbjct: 184 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 213
>AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein.
Length = 436
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 444 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
+S SH I++ VYDC FL HL++ + + Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210
>AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein.
Length = 352
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 444 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
+S SH I++ VYDC FL HL++ + + Y+SG
Sbjct: 93 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 126
>AY037797-1|AAK94762.1| 412|Caenorhabditis elegans GLY-18 protein.
Length = 412
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 432 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 337
SH I+ YDC FL HLKS + + Y+SG
Sbjct: 156 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 185
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
protein F40H6.5 protein.
Length = 1288
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 440 PSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP-PSSMNLVMASLSTC 264
PS S SMT S S ++ S +S +PA + P I + PSS N S++T
Sbjct: 486 PSYAFSTTTSSMTTTASDSTTSDSSVIVSSSKNPAVSNPFITTYSLPSSPNNPFISITTT 545
Query: 263 PPNRARKE 240
P + + ++
Sbjct: 546 PDSASSQK 553
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,796,233
Number of Sequences: 27780
Number of extensions: 396005
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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