Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1510
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    79   5e-15
At2g01340.1 68415.m00051 expressed protein                             29   5.1  
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv...    28   6.7  

>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 33/60 (55%), Positives = 46/60 (76%)
 Frame = +2

Query: 68  DHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 247
           D   LVL+D+L++K +HS FF +L+ RG+ L FKLA+D+ L L +YG+YLY  LI+FAPS
Sbjct: 30  DRRVLVLLDDLSLKSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAPS 89



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 50/82 (60%)
 Frame = +3

Query: 516 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNA 695
           P+LF G    ++  N+LVL +LSA  +AYS NP S++   P   G    L++ +QARNNA
Sbjct: 181 PVLFRGVAHSLNPTNNLVLKVLSASPSAYSANPSSKLSSPPQLTGSSISLVSVMQARNNA 240

Query: 696 RIVFSGSLFFFSDEAFNSPVTK 761
           R+V SGS+  FSD    S V K
Sbjct: 241 RVVISGSVQLFSDRLIRSGVQK 262



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = +1

Query: 253 RFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAA-VIDHFNYDV 429
           RFGG +DS++I  F+D              D+ R IA+ECG + DE+S+A VIDH ++ V
Sbjct: 92  RFGGSLDSKSIADFVDSGRDLILSADTAASDLIRGIATECGVDFDEDSSAMVIDHTSFSV 151

Query: 430 TD-EGDHTRIVVSPKNLIKAPTIVGE 504
           +D +GDHT  +++  +L+K+  I+G+
Sbjct: 152 SDVDGDHT--LIAADDLVKSDVILGK 175


>At2g01340.1 68415.m00051 expressed protein 
          Length = 215

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = -2

Query: 467 GDTTMRVWSPSSVTS*LKWSMTAADSSSISNPH----SEAISLYTSPAAALPAIRRFPPS 300
           G  T +V      T  LK  +TA +       H    SE++  Y + A  L A +R    
Sbjct: 7   GKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAKQRLEAK 66

Query: 299 SMNLVMASLSTCPPNRAR 246
            +  V+  +  CPP R R
Sbjct: 67  RLYFVVEPVKECPPRRVR 84


>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 664

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 432 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHK 316
           S I V  +  CCRFL+  +S+    FS   SG+ + S K
Sbjct: 5   SCICVSAMKPCCRFLISFRSSSLFGFSPPNSGKFINSSK 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,471
Number of Sequences: 28952
Number of extensions: 369349
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)