Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1508
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    29   0.58 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.1  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    27   4.1  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   4.1  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   7.2  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 795 DFGTSGSFILYLRTET*FQNFHSKKIRRPISITRAIEGTTDKEFG 661
           DF     F LY RT+        K I++P+ I RAI G+ ++  G
Sbjct: 298 DFNLPQRFKLYYRTDAGDNAGSEKLIKQPVMIHRAIFGSLERFMG 342


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +2

Query: 14  KLYST--LRTLKTLNKHFKTLISLVPI 88
           K YST   R L+TL +H K ++SL+P+
Sbjct: 289 KSYSTWKARELQTLEQHRKIMLSLIPL 315


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 238 IAETQY*RCVEYSQ*L*GCGIGYKSVAGIARSQLVIGT--TRSETANGSPE 92
           I ET Y + +++   L G GI     AGIA    V+ T   +S + NG+P+
Sbjct: 261 IQETIYDKVLDWGGKLGGAGIAKFMAAGIAYPHEVVRTRLRQSPSINGTPK 311


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 421 FXXXXYKSLWCFLIMTFIKWL-MCKLCVDTIFNFQLNYFNVQKYICHL 561
           F    + S  CF ++ F   L + + C   + +F+   F++ KY C L
Sbjct: 16  FLQRYFHSFHCFFLLCFTVMLCVVQQCSSAMTSFRCPTFSLSKYTCVL 63


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 30  LEHLKHSTNTLKLSFRLFRFASGDPFAVSLRVVPITN*LRAMPATLL*P 176
           LE LK   + L+  FR++    G+    ++R   +TN   AM   LL P
Sbjct: 42  LEPLKARHHQLEYEFRVYNILKGNIGIPTIRWFGVTNSYNAMVMDLLGP 90


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 436 YKSLWCFLIMTFIKWLMCKLCVDTI 510
           + +L+  L++ F+KWLM ++  +TI
Sbjct: 339 FAALFVALLVIFLKWLMSRIFNETI 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,792
Number of Sequences: 5004
Number of extensions: 51642
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)