Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1504X
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 163 2e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 93 4e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 75 8e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 48 1e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 45 7e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.003
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 34 0.013
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.38
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 27 2.7
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 27 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.2
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 163 bits (396), Expect = 2e-41
Identities = 81/116 (69%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEA SKRGIL LKYPIEHGIV NWD MEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 424 APSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
AP RE + QAVLSLYASGRT GIVLDSGDGV+HTV
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTV 163
Score = 118 bits (285), Expect = 5e-28
Identities = 68/136 (50%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART*ETRHTAKE 289
EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQK +K
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKR 62
Query: 290 VSCPSNTP--SNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREKMTQ 463
P ++ M + + V+P + + PK+NREKMTQ
Sbjct: 63 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR-VAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 464 IMFATFNXHAMYVAIK 511
I+F TFN A YVAI+
Sbjct: 122 IIFETFNAPAFYVAIQ 137
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.7 bits (230), Expect = 2e-21
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Frame = +1
Query: 259 YVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYN-ELRVAPEEHPVLLTEAPST 435
+VG EA + RG+L ++ PIE GI+ NW ME+IW + + + +L PEEHP+LLTE P
Sbjct: 57 FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLA 116
Query: 436 QGQQREDDPDH-VRNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
+ +E ++ + Q VL+LYAS RT GIVL+ GDG++H+V
Sbjct: 117 NIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSV 168
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QK
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK 54
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 92.7 bits (220), Expect = 4e-20
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = +1
Query: 262 VGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQG 441
VGDEA + R +L +KYP+E+GI+ +++ M ++W +TF+ +L++ P +LLTE P
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
Query: 442 QQREDDPDHVRNIQXARHVR-RHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
RE + + V QAVLSLYA G ++G+V+DSGDGV+H V
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIV 163
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 217
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 74.9 bits (176), Expect = 8e-15
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Frame = +1
Query: 259 YVGDEAHSKRGI-LPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTEAPST 435
++G++A K L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 436 QGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTN--------GIVLDSGDGVSHTV 588
+ RE+ + + + A QAVL+L AS ++ G V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 208
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Frame = +1
Query: 229 RDGRYGTEGSYVGDEAHSKRGILPL-KYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEH 405
RD + + VG++ + G + + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 406 PVLLTEAPSTQGQQREDDPDHVRNIQXARHVRRH-QAVLSLYASGR--TNGIVLDSGDGV 576
P+ +TE + R + + + A V + S Y + + ++GIVL+ G+
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAA 176
Query: 577 SHTV 588
SH +
Sbjct: 177 SHVI 180
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 220
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 45.2 bits (102), Expect = 7e-06
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 295 LPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPDHV- 471
+ +K I +G V NWD +W + +L+ P EHP+L+TE + R + +
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 472 RNIQXARHVRRHQAVLSLYASGRTNGIVLDSG 567
+++ Q + +ASG+ ++D G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 211
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 211
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 35.9 bits (79), Expect = 0.004
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 259 YVGDEA--HSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTEAP- 429
YV DE H+ + +K +GI+ +W++ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 430 STQGQQREDDPDHVRNIQXARHVRRHQAVLSLYASGRTNGIVLDSG-DGVSHT 585
+ Q +++ + QAV +A+ ++ +++D G D S T
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVT 164
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.3 bits (75), Expect = 0.013
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +1
Query: 310 PIEHGIVTNWDAMEKIWHHTFYNELRVAPEE----HPVLLTEAPSTQGQQRE-DDPDHVR 474
PI+ G V +W+A++ W H Y+ L P + +PV L RE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 475 NIQXARHVRRHQAVLSLYASGRTNGIVLDSG 567
Q ++ ++ LYA G +G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.38
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -2
Query: 342 IPVSDDAVFDGVFEGQDTSFAVCLVSYVRAFCPIPTITP*WRGLPTIEGNTARGASSPAK 163
+P + AV +TSFA+ S + PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 162 PALHIP 145
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 338 GMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREKMTQIMFA 475
G+PW + SP N+ S SL+ P P REK+ F+
Sbjct: 219 GIPWDNEMPAAALEQFASPEINSTSYSLKPPIPLNTREKVHSASFS 264
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +2
Query: 86 KN*FKMCAEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART* 265
+N + +CA ++ + NG + K F G+ + + P V++G+G
Sbjct: 100 QNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPDDTQVIIGVGGGKTMD 159
Query: 266 ETRHTAKEVSCPSNTPSNTASS 331
++ A ++ PS TASS
Sbjct: 160 SAKYIAHSMNLPSIICPTTASS 181
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 246 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 154
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 240 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSA 106
PT+ P P N S P PL+TTN TS++
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +1
Query: 385 RVAPEEHPVLLTEAPSTQGQQREDDPDHVRNIQXARHVRRHQAVLSLYASGRTNGIVLDS 564
+ + E+H V PS+ GQ+ ++ Q ++H RR S +S T +
Sbjct: 476 KASAEKHKV--ARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPG 533
Query: 565 G 567
G
Sbjct: 534 G 534
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.2
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = +1
Query: 373 YNELRVAPEEHPVLLTEAPSTQGQQREDDPDHVRNIQXARHVRRHQAVLSLYASGRTNGI 552
Y E + A EH VL + Q DDP+ N R + VL S T I
Sbjct: 17 YKENQYAASEHSVLKKDGDIVLQPQPSDDPNDPLNWNKFR--KNWHLVLICLVSLVTGAI 74
Query: 553 VLDSG 567
D+G
Sbjct: 75 ANDAG 79
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 8.2
Identities = 7/15 (46%), Positives = 14/15 (93%)
Frame = -2
Query: 378 IVEGMMPNLLHGIPV 334
++EG++ +L+HG+PV
Sbjct: 1407 LIEGLLSDLVHGLPV 1421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,982
Number of Sequences: 5004
Number of extensions: 57964
Number of successful extensions: 187
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -