Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1504X
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 1e-41
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_56| Best HMM Match : Actin (HMM E-Value=0) 165 3e-41
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 165 3e-41
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_54| Best HMM Match : Actin (HMM E-Value=0) 68 7e-12
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 62 3e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 52 3e-07
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 52 5e-07
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 51 6e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 50 1e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.075
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.53
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 31 0.70
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 31 0.92
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 31 0.92
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.92
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.92
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 29 2.8
SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 2.8
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 29 2.8
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 2.8
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 2.8
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 2.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 28 4.9
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20) 28 6.5
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 28 6.5
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 166 bits (403), Expect = 1e-41
Identities = 83/116 (71%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEA SKRGIL LKYPIEHGIVTNWD MEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 424 APSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
AP RE + QAVLSLYASGRT GIV+DSGDGVSHTV
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTV 164
Score = 125 bits (302), Expect = 2e-29
Identities = 72/139 (51%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Frame = +2
Query: 101 MCAEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART*ETRHT 280
M +++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 281 AKEVSCPSNTP--SNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREK 454
+K P ++ M + + V+P + + + PKANREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFATFNXHAMYVAIK 511
MTQIMF TFN AMYVAI+
Sbjct: 120 MTQIMFETFNSPAMYVAIQ 138
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 82/116 (70%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEA SKRGIL LKYPIEHGIVTNWD MEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 424 APSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
AP RE + QAVLSLYASGRT GIV+DSGDGV+HTV
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV 164
Score = 126 bits (303), Expect = 2e-29
Identities = 73/136 (53%), Positives = 85/136 (62%), Gaps = 2/136 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART*ETRHTAKE 289
+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK +K
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 290 VSCPSNTP--SNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREKMTQ 463
P ++ M + + V+P + + + PKANREKMTQ
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQ 122
Query: 464 IMFATFNXHAMYVAIK 511
IMF TFN AMYVAI+
Sbjct: 123 IMFETFNSPAMYVAIQ 138
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 165 bits (400), Expect = 3e-41
Identities = 82/116 (70%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEA SKRGIL LKYPIEHGIVTNWD MEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 424 APSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
AP RE + QAVLSLYASGRT GIV+DSGDGV+HTV
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV 163
Score = 125 bits (301), Expect = 3e-29
Identities = 73/136 (53%), Positives = 85/136 (62%), Gaps = 2/136 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART*ETRHTAKE 289
++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK +K
Sbjct: 3 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 290 VSCPSNTP--SNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREKMTQ 463
P ++ M + + V+P + + + PKANREKMTQ
Sbjct: 63 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 464 IMFATFNXHAMYVAIK 511
IMF TFN AMYVAI+
Sbjct: 122 IMFETFNSPAMYVAIQ 137
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 165 bits (400), Expect = 3e-41
Identities = 82/116 (70%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEA SKRGIL LKYPIEHGIVTNWD MEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 424 APSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
AP RE + QAVLSLYASGRT GIV+DSGDGV+HTV
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV 163
Score = 126 bits (304), Expect = 1e-29
Identities = 74/136 (54%), Positives = 85/136 (62%), Gaps = 2/136 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART*ETRHTAKE 289
+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK +K
Sbjct: 3 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 290 VSCPSNTP--SNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREKMTQ 463
P ++ M + + V+P + + + PKANREKMTQ
Sbjct: 63 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 464 IMFATFNXHAMYVAIK 511
IMF TFN AMYVAI+
Sbjct: 122 IMFETFNSPAMYVAIQ 137
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 82/116 (70%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTE 423
G + SYVGDEA SKRGIL LKYPIEHGIVTNWD MEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 424 APSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSHTV 588
AP RE + QAVLSLYASGRT GIV+DSGDGV+HTV
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTV 164
Score = 130 bits (313), Expect = 1e-30
Identities = 75/139 (53%), Positives = 87/139 (62%), Gaps = 2/139 (1%)
Frame = +2
Query: 101 MCAEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKART*ETRHT 280
MC ++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 281 AKEVSCPSNTP--SNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREK 454
+K P ++ M + + V+P + + + PKANREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFATFNXHAMYVAIK 511
MTQIMF TFN AMYVAI+
Sbjct: 120 MTQIMFETFNSPAMYVAIQ 138
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 101 bits (243), Expect = 3e-22
Identities = 45/48 (93%), Positives = 48/48 (100%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 253
++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK
Sbjct: 3 DDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/43 (79%), Positives = 35/43 (81%)
Frame = +1
Query: 244 GTEGSYVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTF 372
G + SYVGDEA SKRGIL LKYPIEHGIVTNWD MEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 508 QAVLSLYASGRTNGIVLDSGDGVSHTV 588
QAVLSLYASGRT GIV+DSGDGV+HTV
Sbjct: 100 QAVLSLYASGRTTGIVMDSGDGVTHTV 126
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 443 NREKMTQIMFATFNXHAMYVAIK 511
N + M +IMF TFN AMYVAI+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQ 100
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = +1
Query: 262 VGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTF-YNELRVAPEEHPVLLTEAPSTQ 438
VGDEA R +L + YP+++GIV NWD M+ +W +TF +++ + P VLLTE P
Sbjct: 57 VGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNP 116
Query: 439 GQQREDDPDHV-RNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGVSH 582
+ RE + + N Q QAVL+LYA G G+V+DSGDGV+H
Sbjct: 117 MKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTH 165
Score = 51.6 bits (118), Expect = 5e-07
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Frame = +2
Query: 101 MCAEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP-RHQGVMVG--------MGQK 253
M A + +V DNG+G K G+AG + P +FPS+VGRP VG +G +
Sbjct: 1 MDANGNSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDE 60
Query: 254 ART*ETRHTAKEVSCP-SNTPSNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLP 430
A + R+ EV+ P N + + FG S M+ PRNT P
Sbjct: 61 AS--QLRYML-EVNYPMDNGIVRNWDDMKHVWDYTFG--ESKMNI--DPRNTKVLLTEPP 113
Query: 431 -QPKANREKMTQIMFATFNXHAMYVAIK 511
P NREKM ++MF + +Y+AI+
Sbjct: 114 LNPMKNREKMIEVMFENYQFEGVYIAIQ 141
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 67.7 bits (158), Expect = 7e-12
Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 352 KIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPDHV-RNIQXARHVRRHQAVLSLY 528
K+W H F ++LRV E+ PVLLTEAP RE + + QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 529 ASGRTNGIVLDSGDGVSHTV 588
ASGRT G V D GDGVSHTV
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTV 2208
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 226
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 62.1 bits (144), Expect = 3e-10
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 400 EHPVLLTEAPSTQGQQREDDPD-HVRNIQXARHVRRHQAVLSLYASGRTNGIVLDSGDGV 576
+HPVLLTEAP + RE + QAVLSLYA+GRT G+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 577 SHTV 588
SH+V
Sbjct: 186 SHSV 189
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +2
Query: 107 AEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 226
+E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1353 SEAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +1
Query: 259 YVGDEAHSKRGILPLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLL 417
++GDEA K K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 285 FIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +2
Query: 95 FKMCAEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 241
FK+ + A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 505 HQAVLSLYASGRTNGIVLDSG 567
+Q LSLYASG T G+ L SG
Sbjct: 766 NQLSLSLYASGMTLGVCLSSG 786
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +1
Query: 508 QAVLSLYASGRTNGIVLDSGDGVSHTV 588
QAVLSLYASGRT G+V DSGDGVSH V
Sbjct: 16 QAVLSLYASGRTTGVVFDSGDGVSHNV 42
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 310 PIEHGIVTNWDAMEKIWHHTFYNELRVAPEEHPVLLTEAPSTQGQQREDDPDHV-RNIQX 486
PI+ G++ +WD EKI + + ++ HP+L++EA +RE + +
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 487 ARHVRRHQAVLSLYASGRTNGIVLDSG 567
+VL+ +A+GR+NG+V+DSG
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSG 89
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = -1
Query: 223 MAGPSHDRGEHGARSIISCETGLAHTGAIV 134
MA + D GE+G+ SI+S ETGLAHTGAI+
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAII 30
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 259 YVGDEAHSKRGILPLKY--PIEHGIVTNWDAMEKIWHHTFYNE 381
++GD+ + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAV 193
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 226 GRDGRYGTEGSYVGDEAHSKRGIL-PLKYPIEHGIVTNWDAMEKIWHHTFYNELRVAP-- 396
GR G + G VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 397 EEHPVLLTE 423
HPV++TE
Sbjct: 165 VNHPVIMTE 173
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 198 GNTARGASSPAKPALHIPEPLSTT 127
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 198 GNTARGASSPAKPALHIPEPLSTT 127
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 198 GNTARGASSPAKPALHIPEPLSTT 127
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 544 WYDRTRTARARLDGDVHGVXVECCEHDLGHLLSVG 440
WYD RT + L ++ GV + E LLS+G
Sbjct: 220 WYDHIRTTKPLLHAEISGVLFKTPEFTFKRLLSLG 254
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -3
Query: 269 SPTYEPSVPYRPSRPDGGAFPRSRGTRREEHH---LLRNRPCTYRSHCLLPTRQLLRR 105
+P Y PS P RP P + + LL RP TYR+ LP+ LL +
Sbjct: 130 APLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 272 RHTAKEVSCPSNTPSNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANRE 451
R+ K++ + + T P + PST++C++ P N S + P PK+++E
Sbjct: 83 RNIVKKMEQDKEKELDLSCPTTSNPTNKDSANPSTLTCITTPPN--SSKVPKPSPKSDKE 140
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 289 LFCCVPRLLRTSLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 146
L C +++ +LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 198 GNTARGASSPAKPALHIPEPLSTT 127
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 198 GNTARGASSPAKPALHIPEPLSTT 127
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 302 SNTPSNTASSL-TGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREK 454
S TP + SS G+P++R ++ + + + PP+ ++ + LP A++ +
Sbjct: 287 STTPKYSMSSQGQGLPFQRTTVVTAQQNSLPPPQFQVTAQVSLPPANASQNE 338
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +2
Query: 272 RHTAKEVSCPSN--TPSNTASSLTGMPWRRF-GIIPSTMSCVSPPRNTLS--CSLRLPQP 436
++T K+V CPS +P S L + + S C+SPP+NTL C +L P
Sbjct: 840 KNTLKQV-CPSQLESPKQCISPLKNTLKQVCPSQLESPKQCISPPKNTLKQVCPSQLESP 898
Query: 437 K 439
K
Sbjct: 899 K 899
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 365 IPSTMSCVSPPRNTLS--CSLRLPQPK 439
+ S C+SPP+NTL C +L PK
Sbjct: 807 LESPKQCISPPKNTLKQVCPSQLESPK 833
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 365 IPSTMSCVSPPRNTLS--CSLRLPQPK 439
+ S C+SPP+NTL C +L PK
Sbjct: 829 LESPKQCISPPKNTLKQVCPSQLESPK 855
Score = 27.5 bits (58), Expect = 8.6
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +2
Query: 272 RHTAKEVSCPSNTPSNTASSLTGM-PWRRFGI--IPSTMSCVSPPRNTL----SCSLRLP 430
++T K+V CPS S S L+ ++ G + S CV+PP+NTL +C L P
Sbjct: 884 KNTLKQV-CPSQLESPKQSDLSPKNTLKQAGPSQLESPEPCVTPPKNTLKQVGTCHLESP 942
Query: 431 QPKANR 448
+ +R
Sbjct: 943 KQADSR 948
>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
Length = 808
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 329 TMPCSMGYLRGRIPLLLCASSPT-YEPSVPYRPSRPD 222
TMP Y GRIPL+ ++PT + VPY PD
Sbjct: 87 TMPAHAQYAMGRIPLV---TAPTGRKKHVPYHSCHPD 120
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Frame = +2
Query: 305 NTPSNTASSLTGMPWRRFGIIPSTMSCVSPPRNTLSCSLRLPQPKANREKMTQIMFAT-- 478
N ASSL W +PS+++ P+ T + + R +T I T
Sbjct: 201 NHVQKRASSLQYAHWGPAPDLPSSITLTISPQKTATKPSTFQPQSSTRHPLTSITTRTTP 260
Query: 479 FNXHAMYVAIKPCSRCTRPVVPTVSCW----TPATVSPTP 586
IKP S T P+ P+ S +P+T S TP
Sbjct: 261 IKPSPSTTPIKP-SPSTTPIKPSPSTTPIKPSPSTTSTTP 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,606,176
Number of Sequences: 59808
Number of extensions: 526872
Number of successful extensions: 1676
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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