Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1504X
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.0  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 146 GMCKAGFAGD 175
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 393 PRGTPCPAH*GSLNPRP 443
           P   P P H G+  PRP
Sbjct: 343 PVPVPVPIHCGNFPPRP 359


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 205 DRGEHGARSIISCETGLA 152
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 511 LDGDVHGVXVECCEH 467
           L+G V GV ++C  H
Sbjct: 316 LEGLVEGVIIDCSNH 330


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 205 DRGEHGARSIISCETGLA 152
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,051
Number of Sequences: 438
Number of extensions: 4697
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)