Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1503
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0679 + 20650513-20650719                                         29   4.8  
10_08_1017 - 22268957-22269279,22269784-22269934,22270084-222701...    29   6.3  
11_02_0089 + 8203056-8203535                                           28   8.3  

>07_03_0679 + 20650513-20650719
          Length = 68

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -1

Query: 348 RRVVLPAASRSVVAGTDSDSWQCCVPASRPQGSRL 244
           RR VL AAS  V A   S     CVPA+R  G +L
Sbjct: 6   RRRVLTAASTLVPAACSSAGGMQCVPAARGGGRKL 40


>10_08_1017 -
           22268957-22269279,22269784-22269934,22270084-22270164,
           22271296-22271374,22273296-22273345
          Length = 227

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 157 NSGTPHRPLTQHAPVRKYN*TLFTRKIQLK 68
           N+ +    LT++ PVRKYN T+  R + L+
Sbjct: 20  NNNSKEILLTKYTPVRKYNLTVILRNLNLR 49


>11_02_0089 + 8203056-8203535
          Length = 159

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -1

Query: 348 RRVVLPAASRSVVAGTDSDSWQCCVPASRPQGSRL 244
           RR VL AAS  V A   S     CVPA+R  G +L
Sbjct: 57  RRRVLTAASTLVPAACGSAGGMPCVPAARGGGRQL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,701,444
Number of Sequences: 37544
Number of extensions: 361893
Number of successful extensions: 1027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)