Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1503
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-proly...    30   2.3  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    28   7.0  

>At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein SP:Q9M222; similar to
           FKBP-type peptidyl-prolyl cis-trans isomerase fkpA
           precursor (PPiase) (Rotamase)(SP:Q8X880) [Escherichia
           coli O157:H7] ; contains Pfam PF00254: peptidyl-prolyl
           cis-trans isomerase, FKBP-type
          Length = 242

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 260 PKDRDCVCFHYLLYDSKYGIKISTTYLTVSGSTLKLRHST 141
           PKD   V FHY+ Y+   G +I +TY  + GS  ++R  T
Sbjct: 135 PKDGQQVTFHYIGYNES-GRRIDSTY--IQGSPARIRMGT 171


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 272 PPPAPKDRDCVCFHYLLYDSKYGIKISTTYLTVSGSTLKLRHSTPTSHT-TCARPKIQLN 96
           PPP P DR   C H LL + +     ST+ L +S     + H   TS++ T ARP +  +
Sbjct: 224 PPPQPGDRHKHCGHPLL-ELRCDQNKSTS-LFISDQEFFVLHVDQTSYSLTLARPDLLHS 281

Query: 95  F 93
           F
Sbjct: 282 F 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,822,065
Number of Sequences: 28952
Number of extensions: 286411
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)