Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1502
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 48 1e-05
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 48 1e-05
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 45 5e-05
08_02_0073 + 11919938-11920060,11922325-11922939 33 0.30
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 28 6.4
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +3
Query: 465 IECSKATHHNEGIGTINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKLQ-KMQDS 641
++C TH I I + +++DN AY + G VYF D F +Y L + D
Sbjct: 123 LQCLPPTHEPRVTKHIEQIIDLITKIMDNGKAYTIE-GDVYFSVDNFPDYLSLSGRKVDQ 181
Query: 642 GEPS-----DADKRNKMAFALWKVTSPRNP 716
P DA KRN FALWK P
Sbjct: 182 NRPGTRVAVDARKRNPADFALWKSAKEGEP 211
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 262 AHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQYEH 441
+H+GHA YV D++ R LK + ++ T E+ +++ ++
Sbjct: 56 SHVGHARAYVAFDVLFRYLK-YLGYEVNYVRNFTDIDDKIIKRANEAGEDALSLSSRFID 114
Query: 442 EFWLDMASLNVAKPLIITRVSE 507
EF DM L P RV++
Sbjct: 115 EFHRDMYELQCLPPTHEPRVTK 136
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +3
Query: 510 INSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKL--QKMQD--SGE--PSDADKRN 671
I+ I ++++IDND AY G VYF + F YG L +K+ D +GE D K+N
Sbjct: 189 IDQIINMIKQIIDNDCAYAI-GGDVYFSVENFPEYGDLSGRKLDDNRAGERVAVDERKKN 247
Query: 672 KMAFALWKVTSPRNP 716
FALWK P
Sbjct: 248 PADFALWKAAKDGEP 262
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/97 (24%), Positives = 47/97 (48%)
Frame = +1
Query: 256 ESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQY 435
+ +HIGHA YV D++ R L+ + + K+ T + +++K+Y
Sbjct: 105 DDSHIGHARAYVAFDVLYRYLR-YLDHKVRYVRNFTDIDDKIIARANQLGEDPFSLSKRY 163
Query: 436 EHEFWLDMASLNVAKPLIITRVSEPLIVLRNSYRGLL 546
+F DMA+L+ P + RVS+ + + N + ++
Sbjct: 164 SDDFLSDMANLHCLPPSVEPRVSDHIDQIINMIKQII 200
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +1
Query: 262 AHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQYEH 441
+HIGHA YV D++ R LK F ++ T E+ T+++ ++ +
Sbjct: 45 SHIGHARAYVAFDVLYRYLK-FLGYEVEYVRNFTDIDDKIIKRANEAGETVTSLSSRFIN 103
Query: 442 EFWLDMASLNVAKPLIITRVSE 507
EF LDMA L P RV++
Sbjct: 104 EFLLDMAQLQCLPPTCEPRVTD 125
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Frame = +3
Query: 465 IECSKATHHNEGIGTINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKLQ------ 626
++C T I I + + ++++N AY + G VYF D F Y L
Sbjct: 112 LQCLPPTCEPRVTDHIEHIIELITKIMENGKAYAME-GDVYFSVDTFPEYLSLSGRKLDH 170
Query: 627 KMQDSGEPSDADKRNKMAFALWKVTSPRNP 716
+ S D KRN FALWK P
Sbjct: 171 NLAGSRVAVDTRKRNPADFALWKAAKEGEP 200
>08_02_0073 + 11919938-11920060,11922325-11922939
Length = 245
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 480 ATHH---NEGIGTINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKL 623
A HH N+ +N++ V+ ++D MA G VYF F NY L
Sbjct: 191 AVHHTLINQSGILVNTLSNMVKTMVDGSMAEYQATGPVYFPGGVFPNYQPL 241
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 525 KFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKLQKMQDSGEP 650
K + LI ND K+G V + + N L K +D GEP
Sbjct: 625 KDLYSLIGNDEGNTEKDGPVLLVSKMWENSYNLSKERDDGEP 666
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,677
Number of Sequences: 37544
Number of extensions: 366137
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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