Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1502
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)                43   2e-04
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)                   29   3.8  
SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)           28   8.7  

>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
          Length = 583

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +1

Query: 244 PHGIESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 363
           P   +++H+GHA  Y+  DI++R+L+S+FN  +   M +T
Sbjct: 46  PTVYDASHMGHARSYITFDIVRRVLQSYFNYDVFCVMNVT 85



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
 Frame = +3

Query: 510 INSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSN-------------YGKLQKMQDS-GE 647
           +  +  F++++I N  AY S NGSVYFDT KF +              G L  + +  GE
Sbjct: 216 VPEVVTFIEKVIANGYAYES-NGSVYFDTIKFGSSEKHSYARLVPEAVGDLDALAEGEGE 274

Query: 648 PSD--ADKRNKMAFALWKVTSPRNP 716
            S    +KR++  FALWK + P  P
Sbjct: 275 LSQNLGEKRSERDFALWKASKPGEP 299



 Score = 35.1 bits (77), Expect = 0.057
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 131 WLMPNGNPTGIYVYNCIANQRVPIILNDPHIATWYSCGPTV 253
           W  P G+   + +YN +  ++   I ++    TWYSCGPTV
Sbjct: 9   WNQPQGHGE-LKLYNSLTREKNLFIPSNGRRVTWYSCGPTV 48



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 412 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSE 507
           F  + + +E E+  DMA+LNV    I+T ++E
Sbjct: 183 FAKLTEFWEQEYHKDMAALNVLPADILTNITE 214


>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 645 HHCLAFFVICHSLRIYRYQNILNRFYLHKPCRYQ*ASVRISQYY*WFRYPRY 490
           H  +    +  + R YR+  I +   L  PC Y+  ++ + Q   ++R+PRY
Sbjct: 183 HPAITDIPLLQTSRYYRHPAITDTLLLQTPCYYRHPAIPLLQTPCYYRHPRY 234


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 456 IKPEFMLILFSNICEVCFTFEAFLNDFVVYIRNTHSGDDFYIEERFENSLY 304
           + PE  ++L   + E   T E  + DFV    N   GD   I +  +N++Y
Sbjct: 117 VSPENRVLLLKQLIEFVSTKENEVKDFVTNFLNKEKGDKSAIGQDEQNNVY 167


>SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)
          Length = 278

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 520 LRNSYRGLLITTWLM*VKTVQYILIPI--NSQTMANYKKC 633
           LRNSY+ +L+ TW   V  + Y L+P+  ++   + Y KC
Sbjct: 101 LRNSYKPVLVITW---VFAILYSLLPLAWDANVASIYHKC 137


>SB_27610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 681 RPFYFFYQHLMVHHCLAFFVICHSLRIYRYQNILNRFYLHKPCRY 547
           RP   F ++  V+H  A  +I HSL + RY     R   H+   Y
Sbjct: 119 RPALSFIRYRCVYHFTATCIILHSLSL-RYNKYCERVSFHRDLHY 162


>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
          Length = 889

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 575 VFTYISHVVINKPLYEFLNTINGSDTLVMMSGFATFNDAIS--SQNSCSYCL 426
           VFT +  + +   +  F +   GS+T V + GFA +N   S    N+ +YC+
Sbjct: 607 VFTGVVRIAMGH-VSSFADVFEGSETRVGLVGFAFYNALFSYDGWNNVNYCV 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,159,519
Number of Sequences: 59808
Number of extensions: 459141
Number of successful extensions: 1225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)