Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1502
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 39 0.003
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 39 0.003
AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl tr... 39 0.004
AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical... 30 1.4
Z92790-1|CAB07225.1| 239|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 28 7.7
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 244 PHGIESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 363
P +S+H+GHA Y+ LDI++R+ + +F + M IT
Sbjct: 212 PTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 251
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1
Query: 412 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSE 507
F ++AK YE EF DMA LNV ++TRVSE
Sbjct: 368 FDDLAKTYEKEFLADMARLNVLPVDVLTRVSE 399
Score = 35.5 bits (78), Expect = 0.038
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 24/87 (27%)
Frame = +3
Query: 528 FVQRLIDNDMAYVSKNGSVYFDTDKFSN-------------YGK-----LQKMQDS-GEP 650
+V+++I N AY +++GSVYFDT F YG+ L+ M++S GE
Sbjct: 407 YVKKIISNGYAYAAEDGSVYFDTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGEL 466
Query: 651 SDAD-----KRNKMAFALWKVTSPRNP 716
S +D KR+ FALWK + P
Sbjct: 467 SMSDDRLKSKRSPNDFALWKSSKDGEP 493
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 152 PTGIYVYNCIANQRVPIILNDPHIATWYSCGPTV 253
P + VYN + Q+ + N+ WY CGPTV
Sbjct: 181 PPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTV 214
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 244 PHGIESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 363
P +S+H+GHA Y+ LDI++R+ + +F + M IT
Sbjct: 211 PTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 250
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1
Query: 412 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSE 507
F ++AK YE EF DMA LNV ++TRVSE
Sbjct: 367 FDDLAKTYEKEFLADMARLNVLPVDVLTRVSE 398
Score = 35.5 bits (78), Expect = 0.038
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 24/87 (27%)
Frame = +3
Query: 528 FVQRLIDNDMAYVSKNGSVYFDTDKFSN-------------YGK-----LQKMQDS-GEP 650
+V+++I N AY +++GSVYFDT F YG+ L+ M++S GE
Sbjct: 406 YVKKIISNGYAYAAEDGSVYFDTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGEL 465
Query: 651 SDAD-----KRNKMAFALWKVTSPRNP 716
S +D KR+ FALWK + P
Sbjct: 466 SMSDDRLKSKRSPNDFALWKSSKDGEP 492
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 152 PTGIYVYNCIANQRVPIILNDPHIATWYSCGPTV 253
P + VYN + Q+ + N+ WY CGPTV
Sbjct: 180 PPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTV 213
>AF077541-10|AAM54170.2| 179|Caenorhabditis elegans Cysteinyl trna
synthetase protein2, isoform a protein.
Length = 179
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 256 ESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 363
+S+H+GHA Y+ LDI++R+ + +F + M IT
Sbjct: 64 DSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 99
>AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical
protein Y23H5A.8 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 433 YEHEFWLDMASLNVAKPLIITRVSEPLIVLRNSYRGLLI 549
YE EF DMA LNV ++TRVS + +G L+
Sbjct: 56 YEKEFLADMARLNVLPVDVLTRVSAQDSIATEEAKGRLL 94
>Z92790-1|CAB07225.1| 239|Caenorhabditis elegans Hypothetical
protein H03G16.1 protein.
Length = 239
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 429 FSNICEVCFTFEAFLNDFVVYIRNTHSGDDFYIEERFENSLYDIEF 292
FS++ ++ TF+ F N+FV I++ FY+ +N ++ +F
Sbjct: 150 FSHVTDLNMTFDFFTNEFVPRIQDM----SFYLPGNLKNGRFEYDF 191
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 131 WLMPNGNPTGIYVYNCIANQRVPII 205
W++PNG P Y+ + +VPI+
Sbjct: 45 WVLPNGQPNKEYLKKSYGDSKVPIL 69
>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
protein F56H1.5 protein.
Length = 1015
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 313 FSV*YRVSHSSWRDLCEQIRY 251
FS+ Y+ + SWR +CE+ R+
Sbjct: 485 FSMIYQTNQESWRSICEKTRH 505
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,987
Number of Sequences: 27780
Number of extensions: 366831
Number of successful extensions: 1043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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