Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1502
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.54 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.71 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.94 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.94 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 539 PLYEFLNTINGSDTLVMMSGFATFNDAIS 453
           P   FL++  GSD  V+  G  +FN  +S
Sbjct: 279 PFQHFLDSFAGSDVTVLGWGHTSFNGMLS 307


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 65  FNLTFVRS--LSHVCSLKPYKDTKWLMPNGNPTGIYVYNCIANQRVPIIL 208
           +N+TF ++   +      P K   W+    N  G  VY+ + +  +P+++
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYSALGSFYIPMLV 262


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 675 FYFFYQH----LMVHHCLAFFVICHSLRIYRYQNILNRFYLHK 559
           FYF   H     M+ + L F  I      + ++ +LNR+YL +
Sbjct: 231 FYFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLER 273


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 675 FYFFYQH----LMVHHCLAFFVICHSLRIYRYQNILNRFYLHK 559
           FYF   H     M+ + L F  I      + ++ +LNR+YL +
Sbjct: 231 FYFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLNRYYLER 273


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 531 VQRLIDNDMAYVSKNGSVYFDTDKFS 608
           V + I   + Y +KNGSV  DT + S
Sbjct: 187 VPQAIQFGVVYENKNGSVILDTARCS 212


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 582 VYFDTDKFSNYGKLQKMQDSGEPSDADKRNKMAFALWKV 698
           V +  D+FS +G+ +     G   DA   +   +  W V
Sbjct: 582 VLYLLDRFSPFGRFKLANTDGTEEDALNLSSAVWFAWGV 620


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 573 NGSVYFDTDKFSNYGKLQKMQDSGEPSDADKRNKMAFALWKVTSP 707
           +G V+F  D  S YG  ++    G P    K++ +   L  +  P
Sbjct: 6   SGKVHFGVDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQP 50


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 573 NGSVYFDTDKFSNYGKLQKMQDSGEPSDADKRNKMAFALWKVTSP 707
           +G V+F  D  S YG  ++    G P    K++ +   L  +  P
Sbjct: 6   SGKVHFGVDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQP 50


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 573 NGSVYFDTDKFSNYGKLQKMQDSGEPSDADKRNKMAFALWKVTSP 707
           +G V+F  D  S YG  ++    G P    K++ +   L  +  P
Sbjct: 6   SGKVHFGVDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQP 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,659
Number of Sequences: 438
Number of extensions: 4526
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)