Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1502
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    58   6e-09
At2g31170.1 68415.m03805 tRNA synthetase class I (C) family prot...    48   6e-06
At3g56300.1 68416.m06258 tRNA synthetase class I (C) family prot...    40   0.001
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein         29   2.3  
At2g04865.1 68415.m00502 expressed protein ; expression supporte...    29   4.1  
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    27   9.4  

>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
 Frame = +3

Query: 459 GIIECSKATHHNEGIGTINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKL--QKM 632
           G ++C   TH       +++I K ++++I+ D  YV + G V+F  DK  NYGKL  Q +
Sbjct: 107 GALQCLPPTHQPRVSEHMDNIIKMIEKIIEKDCGYVVE-GDVFFSVDKSPNYGKLSGQLL 165

Query: 633 QDS--GE--PSDADKRNKMAFALWKVTSPRNP 716
           + +  GE    D+ KRN   FALWK   P  P
Sbjct: 166 EHTRAGERVAVDSRKRNPADFALWKAAKPDEP 197



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +1

Query: 262 AHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQYEH 441
           +HIGHA   V  D++ R LK   +  +      T           ++     +++ ++  
Sbjct: 42  SHIGHARAAVSFDVLYRYLK-HLDYDVTFVRNFTDVDDKIIDRANKNGEDPLDLSNRFCD 100

Query: 442 EFWLDMASLNVAKPLIITRVSE 507
           E+ +DM +L    P    RVSE
Sbjct: 101 EYLVDMGALQCLPPTHQPRVSE 122


>At2g31170.1 68415.m03805 tRNA synthetase class I (C) family protein
           similar to cysteine-tRNA ligase [Escherichia coli]
           GI:41203; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 563

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
 Frame = +3

Query: 510 INSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKL--QKMQD--SGEPSDADKRNK- 674
           I  I   +++++DN  AY   +G +YF  DKF  YGKL  +K++D  +GE    D R K 
Sbjct: 181 IPQIIDLIKQILDNGYAY-KVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVDTRKKH 239

Query: 675 -MAFALWKVTSPRNP 716
              FALWK      P
Sbjct: 240 PADFALWKAAKEGEP 254



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +1

Query: 262 AHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQYEH 441
           +HIGHA  YV  D++ R LK     ++      T           E +    ++++++  
Sbjct: 99  SHIGHARVYVTFDVLLRYLK-HLGYEVSYVRNFTDVDDKIIARAKELEEDPISLSRRFCE 157

Query: 442 EFWLDMASLNVAKPLIITRVSE 507
           EF  DM  L    P +  RVS+
Sbjct: 158 EFNRDMEQLQCLDPSVQPRVSD 179


>At3g56300.1 68416.m06258 tRNA synthetase class I (C) family protein
           similar to cysteinyl-tRNA synthetase [Methanococcus
           maripaludis] GI:6599476; contains Pfam profile PF01406:
           tRNA synthetases class I (C)
          Length = 489

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
 Frame = +3

Query: 465 IECSKATHHNEGIGTINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKL--QKMQ- 635
           ++C   TH       +  I K ++++I+N   Y +  G V+F  DK  +YG+L  Q++  
Sbjct: 108 LQCLLPTHQPRVSDHMEQIIKMIEKIIENGCGY-AVGGDVFFSVDKSPSYGQLSGQRLDH 166

Query: 636 -DSGE--PSDADKRNKMAFALWKVTSPRNP 716
             +G+    D+ KRN   FAL K      P
Sbjct: 167 TQAGKRVAVDSRKRNPADFALRKAAKSGEP 196



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +1

Query: 262 AHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTHFTNIAKQYEH 441
           +HIGHA   V  D++ R L+     ++      T         G +      +++ ++  
Sbjct: 45  SHIGHARAAVSFDLLYRYLR-HLGYQVTYVRNFTDVDDKAKNCGEKP----LDLSNRFCE 99

Query: 442 EFWLDMASLNVAKPLIITRVSE 507
           E+ LDMA+L    P    RVS+
Sbjct: 100 EYLLDMAALQCLLPTHQPRVSD 121


>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 
          Length = 937

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +2

Query: 161 IYVYNCIANQRVPIILNDPHIATWYSC------GPTVSNLLT*VTPAAM*NSISYREFSN 322
           + + +C        +L+ P + T+YSC      G  + N +  ++PA++ NS +YR +  
Sbjct: 353 VLLVDCPTESHAEELLSIPSMKTYYSCLDNSTDGAKLVNCIIHLSPASVTNSSTYRSWMK 412

Query: 323 R 325
           R
Sbjct: 413 R 413


>At2g04865.1 68415.m00502 expressed protein ; expression supported
           by MPSS
          Length = 667

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 576 GSVYFDTDKFSNYGKLQKMQDSGEPSDA 659
           GS+  DTDKF    KLQ+  D  EP+++
Sbjct: 580 GSLLDDTDKFVEESKLQEEFDGEEPTES 607


>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +3

Query: 462 IIECSKATHHNEGIGTINSIEKFVQR---LIDNDMAYVSKNGSVYFDTDKFSN--YGKLQ 626
           I+E   ++     +  + ++E+  ++   ++DN M    +NG V++D+D   +  +    
Sbjct: 211 ILETKSSSGEQVKMFNVKNVEELCKKNKLVVDNQMRSGEENGDVHYDSDNSDSGYFRNGP 270

Query: 627 KMQDSGEPSDADKRNK 674
           K  DS    D   RNK
Sbjct: 271 KKLDSDVSVDGFFRNK 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,684
Number of Sequences: 28952
Number of extensions: 325094
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)