Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1498
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    58   2e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    41   2e-04
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    36   0.009
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    33   0.063
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   3.2  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    27   4.2  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.6  

>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMK 252
           P+ +ADNAG+DS++L+A+L+A H  G +TMGLDM  G + DM+
Sbjct: 443 PTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMR 485



 Score = 33.1 bits (72), Expect = 0.048
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +3

Query: 258 GVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           G+ E+  +K+ V+ S +E A+++LRVD ILK
Sbjct: 488 GILEALKLKQAVVSSGSEGAQLLLRVDTILK 518


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQN-GTVGDMKNWV 261
           P  + DNAG+DS +++ +LR  H++GE   G+DM + G   + + +V
Sbjct: 451 PRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFV 497



 Score = 29.5 bits (63), Expect = 0.59
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 261 VTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           V E   VK   +LSA EAA +IL VD  +K
Sbjct: 497 VWEPSTVKSNAILSATEAATLILSVDETIK 526


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMKNW 258
           P  +  N G +    +  LRA H+ G+++ G+D + G V DM  +
Sbjct: 446 PRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEY 490



 Score = 29.5 bits (63), Expect = 0.59
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 252 ELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
           E GV E   VK Q + +A E+A ++LRVD+I+
Sbjct: 489 EYGVWEPEAVKLQSIKTAIESACLLLRVDDIV 520


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHS------------RGENTMGLDMQNGTVGD 246
           P  +A NA  DS +L A+LRA+H+            RG    GLD+ NG + D
Sbjct: 454 PRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRD 506


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 339 YRHEESSRPLQPQTTGPVSLRHTTRS 262
           +R++  SRP+ P +T P S   +TRS
Sbjct: 383 FRYQRRSRPVSPCSTAPSSPTFSTRS 408


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENT-MGLD-MQNGTVGDMK 252
           P A+A+N+G  S + +  ++A H +     +G+D +Q G+  DM+
Sbjct: 461 PLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGS-NDMR 504


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 542 WYIQPKTCLPNSINIKKKLM*NIPQSDVNQL 634
           +YIQ  T L    N+KK+L    P SD  QL
Sbjct: 62  FYIQRYTALLFQNNLKKQLSAAFPSSDTMQL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,161
Number of Sequences: 5004
Number of extensions: 61647
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)