Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1498
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 54 2e-07
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 49 5e-06
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 40 0.002
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 38 0.012
10_08_0620 - 19321612-19323237 36 0.029
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 36 0.050
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 32 0.62
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 32 0.62
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 31 1.1
01_05_0494 + 22701994-22703117,22703526-22703580 29 3.3
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 29 4.4
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 29 5.8
04_04_1352 - 32831688-32831957 29 5.8
09_06_0193 - 21460365-21460679,21460781-21460931,21461030-214612... 28 7.6
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMK 252
P+ +ADNAG DSA+LI++LRA H + T G+D+ G+VGDM+
Sbjct: 440 PTIIADNAGLDSAELISQLRAEHHKENCTAGIDVITGSVGDMQ 482
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
++ G++E++ VK+ +LLSA EAAEMILRVD I+
Sbjct: 482 QKRGISEAFKVKQAILLSATEAAEMILRVDEII 514
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 48.8 bits (111), Expect = 5e-06
Identities = 20/37 (54%), Positives = 30/37 (81%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNG 234
P+ +ADNAG DSADLI++LRA H + ++T G+D+ +G
Sbjct: 417 PTIIADNAGLDSADLISQLRAEHHKEQSTAGIDVISG 453
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
E+LG++ES+ K+ VL+SA EAAEMILRVD I+
Sbjct: 470 EKLGISESFKAKQAVLMSATEAAEMILRVDEIV 502
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGEN-TMGLDMQNGTVGD 246
P + DNAG+D+ D++ +LR H+ GE G+D+ G + D
Sbjct: 449 PRQLCDNAGFDATDVLNKLRQKHASGEGANFGVDINTGGIAD 490
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGD---MKNW 258
P +A+NAG + ++I+ L A H+ G +G+D++ G D MK W
Sbjct: 447 PRTLAENAGLSAMEIISSLYAEHAGGNTKVGIDLEEGGCKDVSIMKIW 494
>10_08_0620 - 19321612-19323237
Length = 541
Score = 36.3 bits (80), Expect = 0.029
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTV 240
P +A+NAG D + LR H++GE G++++ G +
Sbjct: 464 PYTLAENAGLDPISTVTELRNRHAKGEKNAGINVRKGRI 502
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 35.5 bits (78), Expect = 0.050
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTV 240
P +A+NAG + ++ LR H++GE G++++ G +
Sbjct: 473 PYTLAENAGLNPISIVTELRNRHAKGEKNAGINVRKGQI 511
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
+E + +SY VK Q +A EAA M+LR+D+I+
Sbjct: 496 KERKIWDSYSVKAQTFKTAIEAACMLLRIDDIV 528
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
+E + +SY VK Q +A EAA M+LR+D+I+
Sbjct: 493 KERKIWDSYSVKAQTFKTAIEAACMLLRIDDIV 525
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENT-MGLDMQNGTVGDMK 252
P + N G + + +L+ H+ GEN +G+D +G + DMK
Sbjct: 450 PRTLLQNCGLNVIRTMTQLQGKHANGENAWVGIDGSSGDIVDMK 493
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNG 234
P +A+N+G D+ D+I L+ H RG +GL+ +G
Sbjct: 468 PKTLAENSGLDTQDVIVSLQNEHDRG-LVVGLNHHSG 503
>01_05_0494 + 22701994-22703117,22703526-22703580
Length = 392
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 607 VLHEFFFYVYRIRQASFRLNIPGKL*STLMPIYML---ILFFGANCIRMLECPRLYGLP* 437
VL F F+V + A+ I G+ +T +P+ L +LF G C R E R G
Sbjct: 286 VLRVFRFHVMPLTPAAA---ISGRPRATWLPVDYLEGRMLFVGKGCSRSFEAARFPGFED 342
Query: 436 CYCFIWDDGF 407
+ D+GF
Sbjct: 343 AIIYFLDEGF 352
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 252 ELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
E GV E + K +++ A EAA ILR+D+++K
Sbjct: 485 EYGVIEPAMSKVKIIQFATEAAITILRIDDMIK 517
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
+E V E+ + K+Q +L A + +MIL++D+++
Sbjct: 498 KEQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
>04_04_1352 - 32831688-32831957
Length = 89
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 99 GFGCCGFLPGCASAGAGSCFC 37
G CC + G A+A A +CFC
Sbjct: 33 GSKCCALVDGLAAAEAAACFC 53
>09_06_0193 -
21460365-21460679,21460781-21460931,21461030-21461267,
21461364-21461571,21461776-21461975,21462085-21462186,
21462617-21463967
Length = 854
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 117 PERDCKGFGCCGFLPGC--ASAGAGSCFC 37
P R C FG CG C +A A +C+C
Sbjct: 306 PTRACSAFGSCGPFGYCGDVTATASTCYC 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,475
Number of Sequences: 37544
Number of extensions: 392112
Number of successful extensions: 1137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -