Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1498
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   72   5e-13
SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   5e-13
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)                       36   0.029
SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.068
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMKN 255
           P+ +ADNAGYDSADL+A+LRA H++G+NT GL+M NGTVGDM++
Sbjct: 444 PTIIADNAGYDSADLVAKLRAAHTQGKNTYGLNMVNGTVGDMRD 487



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 30/47 (63%), Positives = 35/47 (74%)
 Frame = +3

Query: 210 YGIRYAKRHCW*YEELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           YG+           +LG+TESY VKRQVLLSAAEAAEMI+RVDNI+K
Sbjct: 473 YGLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNIVK 519


>SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDMKN 255
           P+ +ADNAGYDSADL+A+LRA H++G+NT GL+M NGTVGDM++
Sbjct: 2   PTIIADNAGYDSADLVAKLRAAHTQGKNTYGLNMVNGTVGDMRD 45



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 30/47 (63%), Positives = 35/47 (74%)
 Frame = +3

Query: 210 YGIRYAKRHCW*YEELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           YG+           +LG+TESY VKRQVLLSAAEAAEMI+RVDNI+K
Sbjct: 31  YGLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNIVK 77


>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTV 240
           P  +A+NAG +    +  LR  H++GE T G++++ GTV
Sbjct: 142 PYTLAENAGLNPIATVTELRNRHAQGEVTAGINVRKGTV 180


>SB_37965| Best HMM Match : TIR (HMM E-Value=3.3)
          Length = 189

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGE--------NTMGLDMQNGTVGDMK 252
           P  ++ NA  DSADL+A+LRA H+  +          +GLD+  GTV D K
Sbjct: 84  PKILSVNAAKDSADLVAKLRAFHNTSQINAERSHLKWIGLDLVEGTVRDNK 134


>SB_45479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLD 222
           P A+ADNAG  + +LI++L A H  G+   G D
Sbjct: 21  PRALADNAGVKATELISKLYAAHQEGKMNAGFD 53


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 350  GSTQTPRTRPSPMLSFSSLKTIIPNKTVTLG*TIQPRALQ 469
            G+T  P T   P  + +   T+IP+ TV  G TI P++ +
Sbjct: 2538 GTTMAPETTVVPATTKAPESTVIPDSTVAPGTTITPKSTE 2577


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHS-RGENTMGLDMQNGTVGDMK 252
           P  +  N G ++   I  LRA H+  G  + G+D ++G + DM+
Sbjct: 237 PRTLIQNCGANTIRTITALRAKHAAEGNTSWGIDGESGQIVDMQ 280


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNG 234
           P  +A N+G+D  + + +L   ++     +G+D+ +G
Sbjct: 370 PKTLAQNSGFDPQETMVKLLEEYADSNTPVGVDLSSG 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,137,378
Number of Sequences: 59808
Number of extensions: 467836
Number of successful extensions: 1442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)