Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1498
         (809 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.8  
AY118045-1|AAM54226.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118044-1|AAM54225.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118043-1|AAM54224.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118042-1|AAM54223.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118041-1|AAM54222.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118040-1|AAM54221.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118039-1|AAM54220.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118038-1|AAM54219.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118037-1|AAM54218.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118036-1|AAM54217.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118035-1|AAM54216.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AY118034-1|AAM54215.1|   69|Anopheles gambiae xanthine dehydroge...    24   6.4  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    24   6.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.4  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   8.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.4  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 305  RRQQDLSLYDIRLGHTQFFISPTV 234
            R Q+ L LYD       FFI PTV
Sbjct: 943  RLQKSLMLYDANATENCFFIVPTV 966


>AY118045-1|AAM54226.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118044-1|AAM54225.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118043-1|AAM54224.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118042-1|AAM54223.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118041-1|AAM54222.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118040-1|AAM54221.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118039-1|AAM54220.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118038-1|AAM54219.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118037-1|AAM54218.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118036-1|AAM54217.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118035-1|AAM54216.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AY118034-1|AAM54215.1|   69|Anopheles gambiae xanthine
          dehydrogenase protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 87 CGFLPGCASAGAGSC 43
          CG   GCA  G G+C
Sbjct: 49 CGTKLGCAEGGCGAC 63


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 47  LPAPALAQPGRKPQQPKPLQSRSGDCRPLSP 139
           LPAP +  PG   QQ +P         P+ P
Sbjct: 54  LPAPIVPSPGAPIQQSRPQAVTVRSSAPMLP 84


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 388 VKLFFTENHHPK*NSNIRVNHTTAGTPTFLYNWRRRIILAYIWA 519
           V L   +++HP  + NIR+N +T    T   N     +  Y +A
Sbjct: 307 VPLVPLDSYHPALDFNIRINSSTRRNSTTRQNSTTTALYRYNFA 350


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 187 HHSRGENTMGLDMQNGTVGD 246
           HH+  E   G D++NG  GD
Sbjct: 306 HHNGKEQRTGKDVENGGRGD 325


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 542 RKTIEYFNAHIYANIILRRQLYKNVGVPAVVWFTLM 435
           RK +EY   +++   I   Q+  N+G P   W  L+
Sbjct: 719 RKHVEYACNNVFKAAISLIQIMPNIGGPKSSWRRLL 754


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,176
Number of Sequences: 2352
Number of extensions: 15146
Number of successful extensions: 43
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)