Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1498
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-10|CAA92697.1|  529|Caenorhabditis elegans Hypothetical p...    55   7e-08
U25632-1|AAA93233.1|  529|Caenorhabditis elegans CCT-2 protein.        55   7e-08
AL031268-2|CAA20331.1|  529|Caenorhabditis elegans Hypothetical ...    55   7e-08
AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical...    40   0.002
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    40   0.002
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        38   0.009
AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...    33   0.24 
Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    28   6.9  
L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z68318-10|CAA92697.1|  529|Caenorhabditis elegans Hypothetical
           protein T21B10.7 protein.
          Length = 529

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDM 249
           P+ + DNAG DSA+L+ RLRA H+ G + MG+D++ G V D+
Sbjct: 441 PTIICDNAGLDSAELVTRLRAEHANGRHNMGIDIEKGEVADV 482



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +3

Query: 201 RKHYGIRYAKRHCW*YEELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           R + GI   K       +LGV ESY VK  ++ SAAEA E ILRVD+I+K
Sbjct: 467 RHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIK 516


>U25632-1|AAA93233.1|  529|Caenorhabditis elegans CCT-2 protein.
          Length = 529

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDM 249
           P+ + DNAG DSA+L+ RLRA H+ G + MG+D++ G V D+
Sbjct: 441 PTIICDNAGLDSAELVTRLRAEHANGRHNMGIDIEKGEVADV 482



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +3

Query: 201 RKHYGIRYAKRHCW*YEELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           R + GI   K       +LGV ESY VK  ++ SAAEA E ILRVD+I+K
Sbjct: 467 RHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIK 516


>AL031268-2|CAA20331.1|  529|Caenorhabditis elegans Hypothetical
           protein T21B10.7 protein.
          Length = 529

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDM 249
           P+ + DNAG DSA+L+ RLRA H+ G + MG+D++ G V D+
Sbjct: 441 PTIICDNAGLDSAELVTRLRAEHANGRHNMGIDIEKGEVADV 482



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +3

Query: 201 RKHYGIRYAKRHCW*YEELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           R + GI   K       +LGV ESY VK  ++ SAAEA E ILRVD+I+K
Sbjct: 467 RHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIK 516


>AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical
           protein T10B5.5a protein.
          Length = 535

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGD 246
           P  +  NAG D+ D++ +LR  H++GE   G+D+    VGD
Sbjct: 444 PRQLCQNAGLDALDVLNKLRHRHAQGEKWAGIDIHREAVGD 484


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGE--------NTMGLDMQNGTVGDMK 252
           P  +A NA  DS DL+ +LRA+HS+ +           GLD++ GT+ D K
Sbjct: 452 PKVLASNAARDSTDLVTKLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNK 502



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           +E G+ E  + K + L  A EAA  ILR+D+++K
Sbjct: 502 KEAGILEPALSKVKSLKFATEAAITILRIDDLIK 535


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGE--------NTMGLDMQNGTVGDMK 252
           P  +A NA  DS DL+  LRA+HS+ +           GLD++ GT+ D K
Sbjct: 452 PKVLASNAARDSTDLVTFLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNK 502



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
           +E G+ E  + K + L  A EAA  ILR+D+++K
Sbjct: 502 KEAGILEPALSKVKSLKFATEAAITILRIDDLIK 535


>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDM 225
           P A+A+NAG  + + + +L A H  G+   G+D+
Sbjct: 482 PKAIAENAGMPTTETLTKLYAEHVAGKKNAGIDI 515


>Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical
           protein T03F6.4 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 539 KTIEYFNAHIYANIILRRQL--YKNVGVPAVVWFTLMLLFYLG*WFSVKKSL 390
           KTI  F AH + NI+  R L  Y+  G   ++ ++  L    G  F+ K+ L
Sbjct: 47  KTIRLFEAHCHVNIVDNRPLSKYREDGTDPIITYSFTLFDTRGPEFTQKRRL 98


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -3

Query: 114 ERDCKGFG-CCGFLPGCASAGAGSC 43
           +R C G G CCG + GC     G C
Sbjct: 50  KRQCGGMGGCCGGMSGCGCGSMGMC 74


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 311  SGRDDSSCR*HSEGSTQTPRT--RPSPMLSFS---SLKTIIPNKTVTLG*TIQ 454
            SG   +S    S+GSTQTPR+    SP +S S   S+ T  P  TVT   T++
Sbjct: 1172 SGSTSTSGEITSQGSTQTPRSSLSTSPAISTSTQQSVSTNSPGSTVTQPSTVR 1224


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 38  QKQLPAPALAQPGRKPQ-QPKPLQSRSGDCRP 130
           Q Q P P   Q  + PQ QP+P   R+G C P
Sbjct: 113 QYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLP 144


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 38  QKQLPAPALAQPGRKPQ-QPKPLQSRSGDCRP 130
           Q Q P P   Q  + PQ QP+P   R+G C P
Sbjct: 113 QYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLP 144


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 38  QKQLPAPALAQPGRKPQ-QPKPLQSRSGDCRP 130
           Q Q P P   Q  + PQ QP+P   R+G C P
Sbjct: 113 QYQQPQPPPCQRPQPPQPQPQPYPQRTGGCLP 144


>L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical
           protein ZK112.5 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 447 PYNRGHSNILIQLAPKNNISIYMGIKVLYSFPGIFSLKL 563
           P N   S+ L Q+  K+N+ I +G    YS P    LKL
Sbjct: 96  PLNYPDSSRLAQIISKHNVDIVLGSDYNYSIPNPEYLKL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,722
Number of Sequences: 27780
Number of extensions: 350971
Number of successful extensions: 983
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)