Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1498
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   7.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.7  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   7.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 412 HHPK*NSNIRVNHTTAGT 465
           HHP    N +V+HTT+ +
Sbjct: 401 HHPNCKINRKVHHTTSSS 418


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 688 YYFLYSAFTDWHIKK---IECQLIYVTLWNVLHEFFF 587
           YY L + +T W++ K    E +L Y T    L+ F+F
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYF 233


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 688 YYFLYSAFTDWHIKK---IECQLIYVTLWNVLHEFFF 587
           YY L + +T W++ K    E +L Y T    L+ F+F
Sbjct: 197 YYLLAANYTGWYLTKHNVPEQRLNYFTEDVGLNHFYF 233


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 38   QKQLPAPALAQPGRKPQQPKPLQSRSG 118
            Q+Q P P   Q  ++ QQP+  Q   G
Sbjct: 1525 QQQQPQPQQQQQQQQQQQPQQQQKEYG 1551


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor
          protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 47 LPAPALAQPGRKP 85
          +P P + QPGR+P
Sbjct: 21 VPLPNVPQPGRRP 33


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 725 SKLNYGLNIKAYNCD 769
           +K+++GL+I+ YN D
Sbjct: 60  TKIDFGLSIQHYNVD 74


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 360 WVLPSECYRHEESSRPL 310
           W L  +C+  E S RPL
Sbjct: 832 WRLMEQCWSGEPSKRPL 848


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 360 WVLPSECYRHEESSRPL 310
           W L  +C+  E S RPL
Sbjct: 870 WRLMEQCWSGEPSKRPL 886


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
          protein.
          Length = 33

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 47 LPAPALAQPGRKP 85
          +P P + QPGR+P
Sbjct: 7  VPLPNVPQPGRRP 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,373
Number of Sequences: 438
Number of extensions: 4510
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)