Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1498
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 52 3e-07
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 39 0.003
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 36 0.024
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 35 0.073
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 33 0.30
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 33 0.30
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 32 0.52
At1g04390.1 68414.m00429 expressed protein 29 2.8
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 28 6.4
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 6.4
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 6.4
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 28 6.4
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 28 6.4
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 28 8.4
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/44 (56%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRA-HHSRGENTMGLDMQNGTVGDMK 252
P+ +ADNAG DSA+L+A+LRA HH+ G N G+D+ G VGDM+
Sbjct: 442 PTTIADNAGLDSAELVAQLRAEHHTEGCNA-GIDVITGAVGDME 484
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
EE G+ E++ VK+ VLLSA EA+EMILRVD I+
Sbjct: 484 EERGIYEAFKVKQAVLLSATEASEMILRVDEII 516
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTVGDM 249
P +ADNAG ++ ++IA L H G +G+D++ G D+
Sbjct: 452 PKTLADNAGLNAMEIIAALYTGHGSGNTKLGIDLEEGACKDV 493
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGE--------NTMGLDMQNGTV 240
P +A NA D+ +L+A+LRA+H + ++MGLD+ NGT+
Sbjct: 452 PKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGLDLVNGTI 498
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 252 ELGVTESYVVKRQVLLSAAEAAEMILRVDNILK 350
E GV E + K +++ A EAA ILR+D+++K
Sbjct: 503 EAGVIEPAMSKVKIIQFATEAAITILRIDDMIK 535
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHS--RGEN-TMGLDMQNGTVGD 246
P + DNAG+D+ D++ +LR H+ GE + G+D+ G + D
Sbjct: 449 PRQLCDNAGFDATDVLNKLRQKHAMQSGEGASYGVDINTGGIAD 492
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENT-MGLDMQNGTVGDMK 252
P +A N G + + L+ H+ GEN G+D G + DMK
Sbjct: 448 PRTLAQNCGVNVIRTMTALQGKHANGENAWTGIDGNTGAIADMK 491
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 249 EELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
+E + +SY VK Q +A EAA M+LR+D+I+
Sbjct: 491 KESKIWDSYNVKAQTFKTAIEAACMLLRIDDIV 523
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 124 PSAVADNAGYDSADLIARLRAHHSRGENTMGLDMQNGTV 240
P +A+NAG + ++ LR H++GE G++++ G +
Sbjct: 459 PYTLAENAGLNPIAIVTELRNKHAQGEINAGINVRKGQI 497
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 38 QKQLPAPALAQPGRKPQQPKPLQSRSG--DCRPLSPT 142
Q++ P+PA PGR+P PL S + PLSP+
Sbjct: 24 QEESPSPAAVSPGREPSTDSPLSPSSSPEEDSPLSPS 60
>At1g04390.1 68414.m00429 expressed protein
Length = 849
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 637 CQLIYVTLWNVLHEFFFYVYRIRQASFRL 551
C+L +T W H +F+ YRI +A L
Sbjct: 313 CKLALITRWEGQHHIYFWKYRISEALLSL 341
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 710 VISIISKLNYGLNIKAYNCDYKFNRS 787
++ ++SK + L I + NC Y FNRS
Sbjct: 629 IVKVVSKADVVLYICSLNCYYNFNRS 654
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 252 ELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
E V E+ + K+Q +L A + +MIL++D+++
Sbjct: 423 EQNVFETLIGKQQQILLATQVVKMILKIDDVI 454
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 252 ELGVTESYVVKRQVLLSAAEAAEMILRVDNIL 347
E V E+ + K+Q +L A + +MIL++D+++
Sbjct: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVI 530
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 351 PSECYRHEESSRPLQPQTTGPVSLRHTTR 265
P+ R +SS L QT+GP L+H TR
Sbjct: 654 PNHLLRPSQSSEQLVSQTSGPHILQHMTR 682
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 351 PSECYRHEESSRPLQPQTTGPVSLRHTTR 265
P+ R +SS L QT+GP L+H TR
Sbjct: 654 PNHLLRPSQSSEQLVSQTSGPHILQHMTR 682
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 542 WYIQPKTCLPNSINIKKKLM*NIPQSDVNQL 634
W P TCLP+++N++ + N+ S ++ L
Sbjct: 638 WIYFPMTCLPSTVNVEFLIELNLTHSKLDML 668
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,987
Number of Sequences: 28952
Number of extensions: 316632
Number of successful extensions: 822
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -