Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1497
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    31   0.15 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   2.5  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   2.5  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    27   3.3  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    27   4.3  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 664 SMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVF--HKLSFS 491
           S+PS   +   E ++WL N   L S +FSL P    V+          LG+F  HKL  +
Sbjct: 249 SVPSTLFSRDCEQIFWLEN---LASAVFSLHPFP--VKETVNGLVTQPLGLFRIHKLPLA 303

Query: 490 AHLMDHMN 467
               +H N
Sbjct: 304 LPFTNHAN 311


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 476 SHELCSPKEFNTFKLFMFVFKLFS 405
           SHE+ SP +FN  K    VF+L +
Sbjct: 404 SHEVLSPAQFNALKTLKTVFELIN 427


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 615 NQYKDSIEDAILAEGIENLCNDLNLSPDDFKVL 713
           N+  D IE  ILA GI+ L +   L  +D KV+
Sbjct: 21  NEGLDGIEQEILAAGIDELNSRTRLLENDIKVM 53


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 531 PKLPSIPRTMSSLGSSE-KISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFK 707
           P  P+ P+ +  L + E +++E  +  + N  +    D+      E  C++LNL    F 
Sbjct: 150 PVRPTSPKQIRELATQESRLAEHALRKILNVNQPRSADSPRHASFEKACSELNLDVSSFH 209

Query: 708 VL 713
           ++
Sbjct: 210 LV 211


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +3

Query: 21  KSTQFGIGGFW 53
           KS++FGIGGFW
Sbjct: 241 KSSKFGIGGFW 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,768
Number of Sequences: 5004
Number of extensions: 62100
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)