Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1497
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694...    56   3e-08
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    38   0.013
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821...    30   2.6  
09_04_0516 - 18246439-18246582,18246763-18246899,18247067-182470...    28   7.9  
05_03_0382 + 13342764-13342958,13343178-13343278,13343373-133434...    28   7.9  

>06_01_0903 -
           6939672-6939782,6940051-6940110,6940221-6940322,
           6940464-6940513,6940686-6940750,6940849-6940931,
           6941117-6941140,6941798-6941856,6942041-6942174,
           6942823-6942884,6942908-6942976
          Length = 272

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 20/50 (40%), Positives = 32/50 (64%)
 Frame = +3

Query: 609 LFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           L+N+YK+   D I+ EG+   C DL + P D  +L+++W + A+ MC FT
Sbjct: 83  LYNRYKEPDVDMIMVEGVSQFCTDLQVDPQDIVMLVISWHMKAATMCEFT 132


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 645 ILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           I  EGIE LC+ L +   D ++L+LAWK+   +   FT
Sbjct: 10  ISPEGIETLCSHLEVPHTDVRILMLAWKMGCEKQGYFT 47


>06_01_1195 +
           10280864-10280979,10281024-10281115,10281211-10282156,
           10282378-10283075,10283140-10284068
          Length = 926

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 733 FNFHANIKTLKSSGLKLRSLHRFSMPSAKIASSIESLYWLNNRFILVS 590
           F  H   K+L    +KL+  HR ++    + S +E +   N+R+ L+S
Sbjct: 113 FMVHVGSKSLSQQLMKLKHRHRIAIQIRDLKSRVEEVSDRNSRYSLIS 160


>09_04_0516 -
           18246439-18246582,18246763-18246899,18247067-18247097,
           18248097-18248194,18248222-18248291,18248704-18248835,
           18249213-18249386
          Length = 261

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 497 FFCTFNGSHELCSPKEFNTFKLFM 426
           FF    G H LC+PKE++  K+ +
Sbjct: 38  FFVESEGHHNLCTPKEWSFIKILI 61


>05_03_0382 +
           13342764-13342958,13343178-13343278,13343373-13343459,
           13343559-13343709,13343826-13344116,13346058-13346197,
           13346276-13346467,13346559-13346631,13346708-13346852,
           13347017-13347124,13347213-13347306,13348245-13348324,
           13348665-13348738,13349236-13349253
          Length = 582

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 627 DSIEDAILAEGIENLCNDLNLSP 695
           D+  D  LAEG EN+C D N +P
Sbjct: 188 DAAADEPLAEGDENVCIDFNAAP 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,746,459
Number of Sequences: 37544
Number of extensions: 315635
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)