Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1497
(832 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 4e-16
SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_20409| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24) 31 0.87
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.87
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031) 31 0.87
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 31 0.87
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37) 31 0.87
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 31 1.1
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068) 30 2.0
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 30 2.0
SB_4744| Best HMM Match : Extensin_2 (HMM E-Value=0.23) 30 2.0
SB_43049| Best HMM Match : DUF947 (HMM E-Value=4) 29 4.6
>SB_46597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 82.6 bits (195), Expect = 4e-16
Identities = 39/73 (53%), Positives = 51/73 (69%)
Frame = +3
Query: 540 PSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLIL 719
P I RT+S +++ E KI LF +YKD ED+ILA+G+E C DL + P +F VL+L
Sbjct: 60 PKIVRTLSF--PRQELDEGKILSLFAKYKDDAEDSILADGMEKFCQDLGVDPTEFVVLVL 117
Query: 720 AWKLNASQMCRFT 758
AWK +ASQMCRFT
Sbjct: 118 AWKFDASQMCRFT 130
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 764 EFVQGLKNMKTDSIKGIQHK 823
EF+ G K +K DSIKG+Q+K
Sbjct: 133 EFIDGCKAVKADSIKGLQNK 152
>SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +3
Query: 585 ISETKINLLFNQYKDSIED-AILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
+ + K++ LF++YK+ ED ILAEGI + C DL+L P KVLI+AWK A+ C F+
Sbjct: 59 LDKKKLSSLFDRYKEPDEDDKILAEGISHFCQDLSLDPASLKVLIIAWKFRAATQCEFS 117
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 32.7 bits (71), Expect = 0.38
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 444 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 502
Query: 693 PDDFKVLILAWKL 731
++ + + KL
Sbjct: 503 SEENSLKAILQKL 515
>SB_20409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 32.3 bits (70), Expect = 0.50
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISET-KINLLFNQYKDSIEDAILAE---GIENLCND 680
+P LFN IP T SS K+ T K+N L Y D + IL++ G+EN
Sbjct: 5 SPTLFNIFTNDIPETFSSSCDPVKLDNTSKLNCLL--YADDL--VILSDSVTGLENCLQK 60
Query: 681 LNLSPDDFKVLI 716
L +S D +K+ +
Sbjct: 61 LKMSADKWKLTV 72
>SB_51188| Best HMM Match : RVT_1 (HMM E-Value=4.5e-24)
Length = 505
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 121 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 179
Query: 693 PDD 701
++
Sbjct: 180 SEE 182
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 1487 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 1545
Query: 693 PDD 701
++
Sbjct: 1546 SEE 1548
>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
Length = 313
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 241 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 299
Query: 693 PDD 701
++
Sbjct: 300 SEE 302
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 1207 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 1265
Query: 693 PDD 701
++
Sbjct: 1266 SEE 1268
>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 315
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 243 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 301
Query: 693 PDD 701
++
Sbjct: 302 SEE 304
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 470 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 528
Query: 693 PDD 701
++
Sbjct: 529 SEE 531
>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
Length = 458
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLS 692
+P LFN L +P T++ S+ + TK+N L D + + + G+++L N L++
Sbjct: 243 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL-YADDLVLFSETSSGLQDLLNRLSIY 301
Query: 693 PDD 701
++
Sbjct: 302 SEE 304
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 513 TPKLFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDS-IEDAILAEGIENLCNDLNL 689
+P LFN L +P T++ S+ + TK+N L Y D + + + G+++L N L++
Sbjct: 535 SPTLFNLFLSDLPDTLAKSSSAHILGNTKLNCLL--YADGLVLFSETSSGLQDLLNRLSI 592
Query: 690 SPDD 701
++
Sbjct: 593 YSEE 596
>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
Length = 919
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 522 LFNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIEN-LCNDLNLSPD 698
L +PK PS P S E S ++ + + +EDA A+ + N C+DL + D
Sbjct: 338 LSDPKYPSFPFECSHDHDYECSSCERLRSVLAGIQRVVEDA--AQPLSNDQCDDLRYTVD 395
Query: 699 DFKVLILAWK 728
V I AWK
Sbjct: 396 QAVVAISAWK 405
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +3
Query: 531 PKLPSIPRTMSSLGSSEKISETKINLLFNQ-YKDSIEDAIL-AEGIENLCNDLN 686
P+ S+P + SS SSE + E ++++ ++ K+ IE+A+ E I++ N+L+
Sbjct: 286 PQTDSVPSSSSSSESSELLHEKQLDIFVDELLKEVIENAVSDVEQIKDFANNLS 339
>SB_4744| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
Length = 619
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSD---IFSLDPSDDIVRGID----GNFGL 527
LR +H + PSA + S+ ++ N L+ I S +PS +R I + L
Sbjct: 68 LRFIHSAN-PSAYLLDSLRFIHSANPSAYLLDSLRFIHSANPSAYFLRFIHPANPSAYLL 126
Query: 526 NSLGVFHKLSFSAHLMDHMNFVH 458
+SL H + SA+L+D + F+H
Sbjct: 127 DSLRFIHSANPSAYLLDSLRFIH 149
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSD---DIVRGID----GNFGL 527
LR +H + PSA + S+ ++ N + I S +PS D +R I + L
Sbjct: 434 LRFIHSAN-PSAYLLDSLRFIHSANPSAYFLRFIHSANPSAYLLDSLRYIHPANPSAYLL 492
Query: 526 NSLGVFHKLSFSAHLMDHMNFVH 458
+SL H + SA+L+D + F+H
Sbjct: 493 DSLRYIHSANPSAYLLDSLRFIH 515
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 241 LRFIHSAN-PSAYLLDSLRFIHPANPSAYLLDSLRFIHPANP-----SAAYLLDSLRFIH 294
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 295 PANPSAYLLDSLRFIH 310
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 129 LRFIHSAN-PSAYLLDSLRFIHSANPSAYLLDSLRFIHPANPSA------YLLDSLRFIH 181
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 182 PANPSAYLLDSLRFIH 197
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 177 LRFIHPAN-PSAYLLDSLRFIHPANPSAYLLDSLRFIHPANPSA------YLLDSLRFIH 229
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 230 SANPSAYLLDSLRFIH 245
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 370 LRFIHPAN-PSAYLLDSLRFIHPANPSAYLLDSLRFIHPANPSA------YLLDSLRYIH 422
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 423 SANPSAYLLDSLRFIH 438
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 290 LRFIHPAN-PSAYLLDSLRFIHPANPSAYLLDSLRFIHPANPSA------YLLDSLRFIH 342
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 343 PANPSAYLLDSLRFIH 358
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 306 LRFIHPAN-PSAYLLDSLRFIHPANPSAYLLDSLRFIHPANPSA------YLLDSLRFIH 358
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 359 PANPSAYLLDSLRFIH 374
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 322 LRFIHPAN-PSAYLLDSLRFIHPANPSAYLLDSLRFIHPANPSA------YLLDSLRFIH 374
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + F+H
Sbjct: 375 PANPSAYLLDSLRFIH 390
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = -1
Query: 685 LRSLHRFSMPSAKIASSIESLYWLNNRFILVSDIFSLDPSDDIVRGIDGNFGLNSLGVFH 506
LR +H + PSA + S+ ++ N L+ + + P++ + L+SL H
Sbjct: 511 LRFIHSAN-PSAYLLDSLRFIHSANPSAYLLDSLRYIHPANPSA------YLLDSLRFIH 563
Query: 505 KLSFSAHLMDHMNFVH 458
+ SA+L+D + ++H
Sbjct: 564 SANPSAYLLDSLRYIH 579
>SB_43049| Best HMM Match : DUF947 (HMM E-Value=4)
Length = 209
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 555 TMSSLGSSEKISETKINLLFNQYKDSIE 638
TM SL SS KISE + N +YK ++
Sbjct: 96 TMQSLVSSSKISEAEANAYIERYKKEVD 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,485,684
Number of Sequences: 59808
Number of extensions: 392287
Number of successful extensions: 859
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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