Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1497
         (832 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040442-1|AAH40442.1|  304|Homo sapiens DCN1, defective in cull...    76   2e-13
AY364247-1|AAQ76806.1|  304|Homo sapiens hypothetical protein pr...    76   2e-13
BC013163-1|AAH13163.2|  254|Homo sapiens DCUN1D1 protein protein.      54   8e-07
BC009478-1|AAH09478.1|  259|Homo sapiens DCN1, defective in cull...    54   8e-07
AF456426-1|AAL78673.1|  259|Homo sapiens squamous cell carcinoma...    54   8e-07
AF456425-1|AAL78672.1|  259|Homo sapiens squamous cell carcinoma...    54   8e-07
AF292100-1|AAG00606.2|  259|Homo sapiens RP42 protein protein.         54   8e-07
BC056669-1|AAH56669.1|  259|Homo sapiens DCN1, defective in cull...    53   1e-06
AL442125-3|CAI39779.1|  232|Homo sapiens DCN1, defective in cull...    53   1e-06
AL160251-2|CAI39429.1|  232|Homo sapiens DCN1, defective in cull...    53   1e-06
AK001566-1|BAA91760.1|  186|Homo sapiens protein ( Homo sapiens ...    53   1e-06
AL442125-2|CAI39778.1|   93|Homo sapiens DCN1, defective in cull...    45   3e-04
D87466-1|BAA13405.1|  309|Homo sapiens KIAA0276 protein.               45   4e-04
BX537944-1|CAD97912.1|  315|Homo sapiens hypothetical protein pr...    45   4e-04
BC053897-1|AAH53897.2|  257|Homo sapiens DCN1, defective in cull...    45   4e-04
BC004169-1|AAH04169.1|  237|Homo sapiens DCN1, defective in cull...    44   5e-04
AY364246-1|AAQ76805.1|  224|Homo sapiens hypothetical protein pr...    44   5e-04
AK056993-1|BAB71336.1|  237|Homo sapiens protein ( Homo sapiens ...    44   5e-04

>BC040442-1|AAH40442.1|  304|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 3 (S. cerevisiae)
           protein.
          Length = 304

 Score = 75.8 bits (178), Expect = 2e-13
 Identities = 33/65 (50%), Positives = 46/65 (70%)
 Frame = +3

Query: 564 SLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQ 743
           S  ++E+ S  ++  LF +YKD  EDAIL EG+E  CNDL + P +F+VL+LAWK  A+ 
Sbjct: 79  SKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAAT 138

Query: 744 MCRFT 758
           MC+FT
Sbjct: 139 MCKFT 143


>AY364247-1|AAQ76806.1|  304|Homo sapiens hypothetical protein
           protein.
          Length = 304

 Score = 75.8 bits (178), Expect = 2e-13
 Identities = 33/65 (50%), Positives = 46/65 (70%)
 Frame = +3

Query: 564 SLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQ 743
           S  ++E+ S  ++  LF +YKD  EDAIL EG+E  CNDL + P +F+VL+LAWK  A+ 
Sbjct: 79  SKSNAEESSLQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAAT 138

Query: 744 MCRFT 758
           MC+FT
Sbjct: 139 MCKFT 143


>BC013163-1|AAH13163.2|  254|Homo sapiens DCUN1D1 protein protein.
          Length = 254

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           +   K+  L+N+YKD   E+ I  +GI+  C+DL L P    VLI+AWK  A+  C F+
Sbjct: 55  LDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFS 113


>BC009478-1|AAH09478.1|  259|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 1 (S. cerevisiae)
           protein.
          Length = 259

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           +   K+  L+N+YKD   E+ I  +GI+  C+DL L P    VLI+AWK  A+  C F+
Sbjct: 60  LDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFS 118


>AF456426-1|AAL78673.1|  259|Homo sapiens squamous cell
           carcinoma-related oncoprotein protein.
          Length = 259

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           +   K+  L+N+YKD   E+ I  +GI+  C+DL L P    VLI+AWK  A+  C F+
Sbjct: 60  LDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFS 118


>AF456425-1|AAL78672.1|  259|Homo sapiens squamous cell
           carcinoma-related oncoprotein protein.
          Length = 259

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           +   K+  L+N+YKD   E+ I  +GI+  C+DL L P    VLI+AWK  A+  C F+
Sbjct: 60  LDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFS 118


>AF292100-1|AAG00606.2|  259|Homo sapiens RP42 protein protein.
          Length = 259

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           +   K+  L+N+YKD   E+ I  +GI+  C+DL L P    VLI+AWK  A+  C F+
Sbjct: 60  LDRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFS 118


>BC056669-1|AAH56669.1|  259|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 2 (S. cerevisiae)
           protein.
          Length = 259

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           + + K+  L+ +YKD   E+ I  +GI+  C+DL+L P    VL++AWK  A+  C F+
Sbjct: 60  VDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFS 118


>AL442125-3|CAI39779.1|  232|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 2 (S. cerevisiae)
           protein.
          Length = 232

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           + + K+  L+ +YKD   E+ I  +GI+  C+DL+L P    VL++AWK  A+  C F+
Sbjct: 59  VDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFS 117


>AL160251-2|CAI39429.1|  232|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 2 (S. cerevisiae)
           protein.
          Length = 232

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           + + K+  L+ +YKD   E+ I  +GI+  C+DL+L P    VL++AWK  A+  C F+
Sbjct: 59  VDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFS 117


>AK001566-1|BAA91760.1|  186|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10704 fis, clone NT2RP3000841. ).
          Length = 186

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           + + K+  L+ +YKD   E+ I  +GI+  C+DL+L P    VL++AWK  A+  C F+
Sbjct: 60  VDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFS 118


>AL442125-2|CAI39778.1|   93|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 2 (S. cerevisiae)
           protein.
          Length = 93

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +3

Query: 585 ISETKINLLFNQYKD-SIEDAILAEGIENLCNDLNLSPDDFKVLILAWK 728
           + + K+  L+ +YKD   E+ I  +GI+  C+DL+L P    VL++AWK
Sbjct: 45  VDKKKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWK 93


>D87466-1|BAA13405.1|  309|Homo sapiens KIAA0276 protein.
          Length = 309

 Score = 44.8 bits (101), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +3

Query: 612 FNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           F +Y  + +D +  EG+E  C D+ + P++  +L+LAWKL+A  M  FT
Sbjct: 127 FYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFT 174


>BX537944-1|CAD97912.1|  315|Homo sapiens hypothetical protein
           protein.
          Length = 315

 Score = 44.8 bits (101), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +3

Query: 612 FNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           F +Y  + +D +  EG+E  C D+ + P++  +L+LAWKL+A  M  FT
Sbjct: 133 FYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFT 180


>BC053897-1|AAH53897.2|  257|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 4 (S. cerevisiae)
           protein.
          Length = 257

 Score = 44.8 bits (101), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +3

Query: 612 FNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           F +Y  + +D +  EG+E  C D+ + P++  +L+LAWKL+A  M  FT
Sbjct: 110 FYEYAGT-DDVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFT 157


>BC004169-1|AAH04169.1|  237|Homo sapiens DCN1, defective in cullin
           neddylation 1, domain containing 5 (S. cerevisiae)
           protein.
          Length = 237

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 567 LGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQM 746
           +   E  S  K    F +Y    ++ +  EG+E  C D+ + P++  +L+LAWKL A  M
Sbjct: 40  ISGEEHFSSKKCLAWFYEYAGP-DEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESM 98

Query: 747 CRFT 758
             FT
Sbjct: 99  GFFT 102


>AY364246-1|AAQ76805.1|  224|Homo sapiens hypothetical protein
           protein.
          Length = 224

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 567 LGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQM 746
           +   E  S  K    F +Y    ++ +  EG+E  C D+ + P++  +L+LAWKL A  M
Sbjct: 40  ISGEEHFSSKKCLAWFYEYAGP-DEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESM 98

Query: 747 CRFT 758
             FT
Sbjct: 99  GFFT 102


>AK056993-1|BAB71336.1|  237|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32431 fis, clone SKMUS2001147, weakly similar to
           Mus musculus RP42 mRNA. ).
          Length = 237

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 567 LGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQM 746
           +   E  S  K    F +Y    ++ +  EG+E  C D+ + P++  +L+LAWKL A  M
Sbjct: 40  ISGEEHFSSKKCLAWFYEYAGP-DEVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESM 98

Query: 747 CRFT 758
             FT
Sbjct: 99  GFFT 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,439,235
Number of Sequences: 237096
Number of extensions: 1938856
Number of successful extensions: 3204
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3204
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)