Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1497
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL024499-2|CAB54260.2|  242|Caenorhabditis elegans Hypothetical ...    48   8e-06
AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical ...    45   8e-05
AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    29   4.1  

>AL024499-2|CAB54260.2|  242|Caenorhabditis elegans Hypothetical
           protein H38K22.2b protein.
          Length = 242

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 558 MSSLGSSEKISETKINLLFNQY---KDSI-EDAILAEGIENLCNDLNLSPDDFKVLILAW 725
           M+ L S +K   TKI  LFNQY   KD + E  +   GI  L  DL     D +VL+LAW
Sbjct: 1   MNRLKSDQK---TKIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAW 57

Query: 726 KLNASQMCRFT 758
           K  A   C F+
Sbjct: 58  KFTAQTQCEFS 68


>AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical
           protein H38K22.2a protein.
          Length = 295

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +3

Query: 549 PRTMSSLGSSEKISETKINLLFNQY---KDSI-EDAILAEGIENLCNDLNLSPDDFKVLI 716
           P   +       +  + I  LFNQY   KD + E  +   GI  L  DL     D +VL+
Sbjct: 48  PNLFAGSTPQPSVDRSNIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLV 107

Query: 717 LAWKLNASQMCRFT 758
           LAWK  A   C F+
Sbjct: 108 LAWKFTAQTQCEFS 121


>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
          protein 5 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 35 WYWWILVHIISITEIL--PCSFY 97
          W+WW+LV I+S+  ++   C+ Y
Sbjct: 4  WWWWVLVAILSLCAVILSSCALY 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,089
Number of Sequences: 27780
Number of extensions: 333162
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)