Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1497
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   8.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 220 FFMYSK---LYYNSFPMGHCLSCFKSQANAEIRSITG 321
           FFM  K     YNSF  G  L     Q  A I S+TG
Sbjct: 95  FFMMIKTPIFIYNSFNTGFALGNLGCQIFAVIGSLTG 131


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 221 FLCIQNYITTVFQWATVSA--VSNLKLMLK*EVSQDPTQKMMR*QIYLFLCQFILKWSPF 394
           FL +   I  VF   +  A  V  LK + K   +    +  +   + L +  F+L WSP+
Sbjct: 68  FLFVLGLIVPVFTIVSSYAAIVLTLKKVRKRAGASGRREAKITKMVALMITAFLLAWSPY 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,538
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)