Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1497
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12760.1 68416.m01593 expressed protein similar to RP42 prote...    64   8e-11
At1g15860.1 68414.m01903 expressed protein                             56   4e-08
At5g28400.1 68418.m03448 expressed protein                             32   0.54 
At5g28320.1 68418.m03438 expressed protein This is likely a pseu...    32   0.54 
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    31   0.71 
At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containi...    28   6.6  
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    28   6.6  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    28   6.6  
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)...    28   8.7  

>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
           [Homo sapiens] GI:9896486; contains Pfam profile
           PF00627: UBA/TS-N domain, PF03556: Domain of unknown
           function (DUF298)
          Length = 250

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = +3

Query: 597 KINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFT 758
           ++  L+N+YKD   D ILAEGI  LCNDL + P D   L+L+W +NA+  C F+
Sbjct: 59  RLEELYNRYKDPYSDMILAEGISVLCNDLEVEPQDIVTLVLSWHMNAATACEFS 112


>At1g15860.1 68414.m01903 expressed protein
          Length = 225

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 28/69 (40%), Positives = 44/69 (63%)
 Frame = +3

Query: 552 RTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENLCNDLNLSPDDFKVLILAWKL 731
           R+ SS  S++++   +I+ LFNQY +     I  EGIE LC++L +S  D ++L+LAWK+
Sbjct: 23  RSASSKASNKEMD--RIDHLFNQYANKSSSLIDPEGIEELCSNLEVSHTDIRILMLAWKM 80

Query: 732 NASQMCRFT 758
            A +   FT
Sbjct: 81  KAEKQGYFT 89


>At5g28400.1 68418.m03448 expressed protein
          Length = 996

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +3

Query: 597  KINLLFNQYKDSIEDAILAE-GIENLCNDLNLS-PD 698
            K+  L  ++K+++E+A+LAE G+EN C D  +S PD
Sbjct: 957  KLVQLQAKFKNALEEAVLAENGVENNCRDAEISCPD 992


>At5g28320.1 68418.m03438 expressed protein This is likely a
            pseudogene.
          Length = 967

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +3

Query: 597  KINLLFNQYKDSIEDAILAE-GIENLCNDLNLS-PD 698
            K+  L  ++K+++E+A+LAE G+EN C D  +S PD
Sbjct: 928  KLVQLQAKFKNALEEAVLAENGVENNCRDAEISCPD 963


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 528 NPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIENL 671
           NP    + + + S+G+  +I ETKI+LLF+  KD     ++A G E +
Sbjct: 17  NPTSNDLKKILESVGA--EIDETKIDLLFSLIKDHDVTELIAAGREKM 62


>At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containing
           protein low similarity to RNA binding protein PufA
           [Dictyostelium discoideum] GI:5106561; contains Pfam
           profile PF00806: Pumilio-family RNA binding repeat
          Length = 477

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 503 TKFFCTFNGSHELCSPKEFNTFKLFMFVFKLFS 405
           T+F CT          + F  FKLF+ V ++FS
Sbjct: 70  TRFMCTLRQGPNYIHYQSFTAFKLFIVVVQVFS 102


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 721 ANIKTLKSSGLKLRSLHRFSMPSAKIASSIESLYWLNNRF 602
           A IK L++    + +    SMPS K   +++SLY  NNRF
Sbjct: 116 AAIKNLRTLSF-MNNKFNGSMPSVKNFGALKSLYLSNNRF 154


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 175 KRSEKLLSRSFGCGTFFMYSKLYYNSFPMGH 267
           +R++K+L R   CG  F+Y K  +N   + H
Sbjct: 71  RRNKKILIRCKECGKGFLYEKCLFNHLQVTH 101


>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
           identical to transcription factor (MYB98) GI:15375282
           from [Arabidopsis thaliana]
          Length = 427

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 525 FNPKLPSIPRTMSSLGSSEKISETKINLLFNQYKDSIEDAILAEGIE 665
           FN   P + R +SS  SS    ETK + L      + ED +L + +E
Sbjct: 187 FNKTKPFLTRKLSSSSSSSSWKETKKSTLVKGQWTAEEDRVLIQLVE 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,543,076
Number of Sequences: 28952
Number of extensions: 296538
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)