Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1495
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.8  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.8  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -1

Query: 470 YKSYYIIINRDVSRRARPRHC--FILKF--LQRLL 378
           +K  Y +IN  ++ R  P++C  F+++   L RLL
Sbjct: 191 FKQRYQLINEQMAVRINPKNCASFVIEVRKLSRLL 225


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 755 VSSLNRDEIKFLE 793
           V+SLNR+EIK L+
Sbjct: 608 VTSLNREEIKRLD 620


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory
          receptor candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 23 CGYIFSGDLF 52
          CGYIFS  LF
Sbjct: 50 CGYIFSAILF 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,469
Number of Sequences: 336
Number of extensions: 3141
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)