Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1494X
(346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 36 0.001
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 34 0.007
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 33 0.009
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 31 0.038
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 31 0.050
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 27 0.82
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.1
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 1.9
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 2.5
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 3.3
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 4.4
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 24 5.8
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 7.6
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 24 7.6
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 36.3 bits (80), Expect = 0.001
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +1
Query: 4 NFTNEHGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPLDKTRGQLVQRLHELAT 183
N +E+G +P+H A +G++ + + LV G ++I ++ G+TPL + ++ H+L
Sbjct: 31 NAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPLFVC--EKLEIAHDLIN 88
Query: 184 QQGQD 198
Q D
Sbjct: 89 QYNAD 93
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 33.9 bits (74), Expect = 0.007
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 VNFTNEHGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPLDKTRGQLVQRL-HEL 177
VN + G +PLHYA + + I +L+ G + G P+D + + ++ + E
Sbjct: 888 VNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGKKPIDLSSSEPIKLVFKEA 947
Query: 178 ATQQGQDLKKIQFKD 222
+Q Q + + KD
Sbjct: 948 NNEQAQSISRSLIKD 962
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 33.5 bits (73), Expect = 0.009
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 1 VNFTNEHGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPL 135
+N NE GN+ +H+A G+ I + L+ AG I N Y +P+
Sbjct: 64 INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPI 108
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 31.5 bits (68), Expect = 0.038
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 4 NFTNEHGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPLDKTRGQLVQRLHELAT 183
NFTN + N+ Y FWG + + G +VS + YGDT + ++L + A+
Sbjct: 222 NFTNVY-NTSCEYPRFWGEDGGPVSIQFKGCYVSDYDHYGDTEAFGSHPDWQRQLSKFAS 280
Query: 184 QQ 189
Q
Sbjct: 281 VQ 282
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 31.1 bits (67), Expect = 0.050
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 13 NEHGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPL 135
++ G++ LH+AC G+ + + L+ A + + N+ TPL
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 0.82
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 118 YGDTPLDKTRGQLVQRLHELATQQGQDLKKIQFKDQSWLGYKTR 249
+G K L+ RLHEL +KK QFKD WL +R
Sbjct: 593 FGFAKTPKQSAGLLGRLHEL-------MKKPQFKDMHWLSGPSR 629
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.6 bits (56), Expect = 1.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 1 VNFTNEHGNSPLHYACFWGYNAIAEDLVLAG 93
+N ++ +G +PLH+A G+ + +LV AG
Sbjct: 167 LNTSDSYGFTPLHFALAEGHPDVGVELVRAG 197
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 22 GNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPL 135
G +PLH A G + + L+ ++ ++ YG TPL
Sbjct: 141 GQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPL 178
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 1.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 4 NFTNEHGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPLDKTRGQLVQRLHELAT 183
NFTN++ + FWG + + G + S ++YGDT T ++L + A+
Sbjct: 214 NFTNKY-DPKCELPRFWGEDGAPVVIDYVGCYDSDFDQYGDTEAFGTHPDWERQLSKFAS 272
Query: 184 QQ 189
Q
Sbjct: 273 VQ 274
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 2.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 19 HGNSPLHYACFWGYNAIAEDLVLAGDHVSIANKYGDTPLDKTRG 150
H ++PLHYA + L+ G ++ N G TP + + G
Sbjct: 432 HTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTG 475
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 3.3
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 85 LAGDHVSIANKYGDTPLDKTRGQLVQRLHELATQQGQDLKKIQFKDQSWLGYKTRSRTP 261
+ GD I N D P + +G + + + E + +K + +WLGYK + P
Sbjct: 23 ILGDRFEIKNHDYDLP--EIQGSVKEVVLEKCKAAAEIVKGPVLVEDTWLGYKAMNGLP 79
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 4.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 192 ARPEENTI*GPVLAWLQDSQPDATLSRHKGININE 296
A P+E GP++A++ D P+ + + K N+
Sbjct: 671 ATPDEYVPEGPIVAFVDDELPETSKKQKKWFEDND 705
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 5.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 163 RLHELATQQGQDLKKIQFKDQSWLGYKTRSRTPRSHAI 276
R HEL Q + KKI + D W + PR I
Sbjct: 193 RAHELIQLQEKRAKKIDWDDVPWREKPLEAMKPRDWRI 230
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 23.8 bits (49), Expect = 7.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 148 LSFCLEVYHHTCSLLKHDH 92
L FC++V T S+L H H
Sbjct: 1253 LKFCIKVCKETPSMLYHSH 1271
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 214 IVFSSGLAPVE*LARATFVQVDLSFC 137
IV +G+AP+ LA++ VD+ +C
Sbjct: 150 IVAGTGIAPIYQLAQSVKSPVDIVYC 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,970
Number of Sequences: 5004
Number of extensions: 23915
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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