Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1494X
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   0.77 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   7.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   7.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   7.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   7.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   7.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   7.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   7.2  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S G+R
Sbjct: 201 ENETKTCKKYAISSNSLGSR 220


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 129 TSRQNERSTCTKVARASYSTGARPE 203
           T  + +   C  + RA+YS   RP+
Sbjct: 390 TWSEGDLEKCKALTRAAYSRDVRPK 414


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 129 TSRQNERSTCTKVARASYSTGARPE 203
           T  + +   C  + RA+YS   RP+
Sbjct: 390 TWSEGDLEKCKALTRAAYSRDVRPK 414


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 129 TSRQNERSTCTKVARASYSTGARPE 203
           T  + +   C  + RA+YS   RP+
Sbjct: 390 TWSEGDLEKCKALTRAAYSRDVRPK 414


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 343 HVSPEGVTAIWVCSAN 296
           H    G+TAIW+   N
Sbjct: 58  HFIESGITAIWLSPIN 73


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 159 TKVARASYSTGARPEENT 212
           TK     Y  G RP EN+
Sbjct: 10  TKYLLDGYDAGVRPAENS 27


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 QNERSTCTKVARASYSTGAR 197
           +NE  TC K A +S S  +R
Sbjct: 201 ENETKTCKKYAISSNSLRSR 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,088
Number of Sequences: 438
Number of extensions: 1509
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)