Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1493
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           24   1.2  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      23   2.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.2  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 16  SSASSLHAPESRVRDVTCACPPPTYACLVSKHPALN 123
           SS SS+ +P +     T   PPP Y   +  + ALN
Sbjct: 127 SSTSSIPSPSTTDDLSTNPTPPPHYTYQIIPYEALN 162


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 369 ISFKN*VNTIRDLSCDGPN 425
           I+ KN  N IRD   +GPN
Sbjct: 344 ITSKNVANKIRDFYYEGPN 362


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +2

Query: 14  RVRRPVSMRRSHVSE---TSRVRALLQRMPVSSPNILPSTRLCEYNRL 148
           R  RP    R  + E   + RV A L    V+SP   P  R C  NRL
Sbjct: 213 RTPRPKHDGRGRIVERFTSDRVHAAL----VTSPRARPLARTCRDNRL 256


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 704 PGACCPRCGGAL 739
           PG CC  C G L
Sbjct: 101 PGRCCKTCPGDL 112



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 662 CPALK-KDDCQGFTAPGACCPRCGGALRILYSKK 760
           CP +   D+ +    PG CC  C  A  ++ S +
Sbjct: 710 CPQVTCPDNMKLEKVPGECCAICVNATSLVESNR 743


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,705
Number of Sequences: 336
Number of extensions: 4302
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)