Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1493
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    29   0.97 
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    28   1.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   3.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   5.2  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   6.9  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   6.9  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   9.1  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 521  CGANGVTYGSECAAWSEYVSVDYVGPC 601
            C A GVT  SEC  WS   S DY+  C
Sbjct: 1237 CSA-GVTDMSECNTWSYQKSYDYITGC 1262


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 342 QIERKEKKNSFRSLNDGKKTKLLTEEHPRNTVPNSPSSCRSSQ 214
           +IE+K K+N  + LND  KT +   E     +  S S  +++Q
Sbjct: 14  KIEKKSKRNKRKWLNDENKTHVTASEAAIERLKKSASFSQAAQ 56


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 255 NTVPNSPSSCRSSQDGRGS 199
           NT PNSP+S  SS+  +G+
Sbjct: 385 NTAPNSPTSANSSEGNQGN 403


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 324 KKNSFRSLNDGKKTKLLTEEHPRNTVPNSP 235
           +K     L DG K+  LTEE P+  V ++P
Sbjct: 690 EKQELSKLEDGLKSVNLTEEAPKPEVDSTP 719


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = +2

Query: 26  PVSMRRSHVSETSRVRALLQRMPVSSPNILPSTRLCEYNRLQFASRYA 169
           P ++R  H+++   +  ++ R     P ++ S   CE  +     +YA
Sbjct: 117 PRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSVHYCEATKRHHFKQYA 164


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 292 SVIQTPKRIFLFFSFYLE*YHPNLN*FHLKIKLIRYEIYRVMVQTISLKH 441
           S+   P+  F   + YL+  HP  N +H + +L+RY I+ +  + +SL H
Sbjct: 520 SICSLPEN-FRRTTLYLQ--HPVFNRYHSETELMRY-IHHLQSKDLSLAH 565


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 597 GPT*STLTYSLQAAHSEPYVTPFAPHTATDKICKFFDQINFESKYTILLI 448
           G T +  TYS+Q   +EP + P A +   + +    D   F+ + + L I
Sbjct: 218 GMTGTGKTYSMQGTENEPGIIPLAMNDLFEMVENNSDDDTFQIRISYLEI 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,003
Number of Sequences: 5004
Number of extensions: 72586
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)