Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1493
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    29   3.1  
10_08_0247 - 16151969-16152091,16152599-16152718,16153480-161535...    29   4.1  
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297     29   5.4  
08_01_0821 + 7966587-7966832                                           29   5.4  
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504...    29   5.4  
01_06_0045 - 25925083-25925307                                         28   9.5  

>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
            30670186-30670281,30670679-30670828,30670956-30671100,
            30671178-30671251,30671325-30671445,30671697-30671821,
            30671898-30672047,30672249-30672324,30672496-30672557,
            30672597-30672839,30673354-30673683,30673776-30673932,
            30674008-30674139,30674219-30674277,30674734-30674798,
            30674878-30675094,30675413-30675499,30675655-30675750,
            30675938-30676003,30676096-30676287,30676380-30676532,
            30676812-30677052,30677322-30677515,30678212-30678348,
            30678474-30678480,30678708-30678830,30679370-30679427,
            30680018-30680090,30680493-30681765
          Length = 1714

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 123  HVCVNTTDCNSQAAMPVCDTDGRTHANPCHLVMSGRKMGYWGPCFEDVP 269
            + C+  +DCN +    +C  D   H  P  ++   R   Y   C E +P
Sbjct: 1404 NACMLYSDCNQKGLCAICSCDVGDHITPRCMICQAR---YHSSCVEPLP 1449


>10_08_0247 -
           16151969-16152091,16152599-16152718,16153480-16153545,
           16153663-16153711,16154048-16154185,16154291-16154377,
           16155658-16155758,16155847-16155957,16156606-16157025,
           16157819-16157983,16158863-16158994,16159189-16159233
          Length = 518

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 663 VQR*RRTTVKGSRRRALAARDVVGHCGSCIR 755
           ++R R+T  KG  RRA A  + V  CGS IR
Sbjct: 238 LRRQRQTGRKGEERRAAAVPEEVWGCGSSIR 268


>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
          Length = 311

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 749 TRSAMPHHISGSKRPAP*TLDSRPS 675
           T +A PHH+ G++ P P TL   PS
Sbjct: 249 TAAAAPHHLYGARVPPPTTLTMCPS 273


>08_01_0821 + 7966587-7966832
          Length = 81

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 662 CPALKKDDCQGFTAPGACCPRCGGAL 739
           C A ++ +     APGAC PRCGGA+
Sbjct: 14  CGAEEERETASRKAPGAC-PRCGGAV 38


>01_05_0167 +
           18849791-18849973,18850081-18850250,18850341-18850413,
           18850729-18850839,18850947-18850992,18851085-18851148,
           18851810-18851912,18851999-18852094,18852186-18852215,
           18852434-18852533,18852761-18852845,18852965-18853088
          Length = 394

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/96 (25%), Positives = 43/96 (44%)
 Frame = -2

Query: 336 ERKEKKNSFRSLNDGKKTKLLTEEHPRNTVPNSPSSCRSSQDGRGSHVFCHQCHTPA*RL 157
           E  E +  +R+L   ++  L T +  R+   +   + ++ ++   S +FC   H      
Sbjct: 102 EMNELEKEYRTLQTNQQNILETLKQHRDDDVSKGQAVKNQKEPIRS-MFCD--HNQEIEQ 158

Query: 156 ANCSLLYSHKRVEGRMFGDETGIRWRRARTRDVSDT 49
           A   LL S K+  G M   +  +  R   T+DV+DT
Sbjct: 159 AYLDLLNSSKQTLGSMMELQEALLERNRATKDVTDT 194


>01_06_0045 - 25925083-25925307
          Length = 74

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 159 AAMPVCDTDGRTHANPCHLVMSGRKMGYWGPCFEDV---PR*AIWFFFRH 299
           A +PVC   G TH+NPC   + G  +G+       V   P  A  + FRH
Sbjct: 2   AYVPVCVQCG-THSNPCRCKVLGPTLGFVAFVVAGVVEWPLGAFVYLFRH 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,754,160
Number of Sequences: 37544
Number of extensions: 495171
Number of successful extensions: 1316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)