Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1493
(772 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY052138-1|AAK93562.1| 1071|Drosophila melanogaster SD09502p pro... 89 8e-18
AE014296-2453|AAF49684.2| 1071|Drosophila melanogaster CG5392-PA... 89 8e-18
AY058325-1|AAL13554.1| 662|Drosophila melanogaster GH09510p pro... 32 0.76
AE014296-1453|AAF50418.2| 662|Drosophila melanogaster CG32354-P... 32 0.76
AE014297-4066|AAF56664.3| 979|Drosophila melanogaster CG6124-PA... 31 1.3
AF273708-1|AAL35411.1| 118|Drosophila melanogaster PFTAIRE-inte... 31 2.3
AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA... 31 2.3
AY242076-1|AAO85264.1| 523|Drosophila melanogaster CG2264A prot... 29 5.3
AY058615-1|AAL13844.1| 613|Drosophila melanogaster LD30894p pro... 29 5.3
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P... 29 5.3
AE013599-1003|AAM71054.1| 613|Drosophila melanogaster CG2264-PE... 29 5.3
AE013599-1002|AAM71053.1| 613|Drosophila melanogaster CG2264-PD... 29 5.3
AE013599-1001|AAM71052.1| 613|Drosophila melanogaster CG2264-PC... 29 5.3
AE013599-1000|AAF58854.1| 613|Drosophila melanogaster CG2264-PB... 29 5.3
AE013599-999|AAG22291.1| 613|Drosophila melanogaster CG2264-PA,... 29 5.3
BT003621-1|AAO39624.1| 767|Drosophila melanogaster GH04473p pro... 29 7.1
AF454393-1|AAL51006.1| 705|Drosophila melanogaster follistatin ... 29 7.1
AE013599-2026|AAF58158.2| 767|Drosophila melanogaster CG33466-P... 29 7.1
D86546-1|BAA13108.1| 2044|Drosophila melanogaster still life typ... 29 9.3
BT028855-1|ABI34236.2| 242|Drosophila melanogaster RT01130p pro... 29 9.3
BT028823-1|ABI34204.2| 242|Drosophila melanogaster RT01030p pro... 29 9.3
AY118305-1|AAM48334.1| 2061|Drosophila melanogaster GH10341p pro... 29 9.3
AJ000729-1|CAA04262.1| 242|Drosophila melanogaster bHLH protein... 29 9.3
AE014296-987|AAF50756.3| 2052|Drosophila melanogaster CG5406-PA,... 29 9.3
AE014296-986|AAS65075.1| 2061|Drosophila melanogaster CG5406-PC,... 29 9.3
AE014134-1954|AAF53012.2| 777|Drosophila melanogaster CG31869-P... 29 9.3
AE013599-2555|AAF57795.1| 242|Drosophila melanogaster CG5005-PA... 29 9.3
>AY052138-1|AAK93562.1| 1071|Drosophila melanogaster SD09502p protein.
Length = 1071
Score = 88.6 bits (210), Expect = 8e-18
Identities = 44/83 (53%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 518 VCGANGVTYGSECAAWSEYVSVDYVGPCLAVGYISDQMEPKCTFDRIVCPALKKDDCQGF 697
VCG NGVTY S AA +EYV VDYVG C VG + M +C + CPA C+
Sbjct: 861 VCGINGVTYKSSYAARAEYVLVDYVGRCREVGLLVSDMGRRCR--TVKCPAPVSKHCRLI 918
Query: 698 TAPGACCPRC-GGALRILYSKKQ 763
PGACCP C GGA RI+YS+KQ
Sbjct: 919 VPPGACCPLCAGGAFRIIYSRKQ 941
Score = 59.7 bits (138), Expect = 4e-09
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +3
Query: 48 TCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTT--DCNSQAAMPVCDTDGRTHANPCHLVM 221
+CP C+ S VCL+ +Q C Q+VCVN T +C++ VCD+ GRT+ N C L+
Sbjct: 777 SCPSGTQCLDSRKVCLASMQRPCLQYVCVNATASNCSTFHQGEVCDSQGRTYPNACALLK 836
Query: 222 SG--RKMGYWGPC 254
+ ++ YW C
Sbjct: 837 ANPQGQVVYWSAC 849
Score = 33.9 bits (74), Expect = 0.25
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Frame = +2
Query: 512 VAVCGANGVTYGSECAAWSEYVSVDYV-------GPCLAVGYISDQMEPKCTFDRIVCPA 670
V VCG+NG TY S C A DYV C A S +C R VC A
Sbjct: 734 VPVCGSNGNTYPSACVAKCHLPEGDYVYGACNARNACQAAPPNSCPSGTQCLDSRKVCLA 793
Query: 671 LKKDDCQGFTAPGACCPRC 727
+ C + A C
Sbjct: 794 SMQRPCLQYVCVNATASNC 812
>AE014296-2453|AAF49684.2| 1071|Drosophila melanogaster CG5392-PA
protein.
Length = 1071
Score = 88.6 bits (210), Expect = 8e-18
Identities = 44/83 (53%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 518 VCGANGVTYGSECAAWSEYVSVDYVGPCLAVGYISDQMEPKCTFDRIVCPALKKDDCQGF 697
VCG NGVTY S AA +EYV VDYVG C VG + M +C + CPA C+
Sbjct: 861 VCGINGVTYKSSYAARAEYVLVDYVGRCREVGLLVSDMGRRCR--TVKCPAPVSKHCRLI 918
Query: 698 TAPGACCPRC-GGALRILYSKKQ 763
PGACCP C GGA RI+YS+KQ
Sbjct: 919 VPPGACCPLCAGGAFRIIYSRKQ 941
Score = 60.9 bits (141), Expect = 2e-09
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +3
Query: 48 TCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTT--DCNSQAAMPVCDTDGRTHANPCHLVM 221
+CP C+ S VCL+ +Q C Q+VCVN T +C++ VCD+ GRT+ N C L+
Sbjct: 777 SCPSGTQCLDSRKVCLASMQRPCLQYVCVNATASNCSTFHQGEVCDSQGRTYPNACALLK 836
Query: 222 SG--RKMGYWGPC 254
+ ++ YW C
Sbjct: 837 ANPQGQVAYWSAC 849
Score = 33.9 bits (74), Expect = 0.25
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Frame = +2
Query: 512 VAVCGANGVTYGSECAAWSEYVSVDYV-------GPCLAVGYISDQMEPKCTFDRIVCPA 670
V VCG+NG TY S C A DYV C A S +C R VC A
Sbjct: 734 VPVCGSNGNTYPSACVAKCHLPEGDYVYGACNARNACQAAPPNSCPSGTQCLDSRKVCLA 793
Query: 671 LKKDDCQGFTAPGACCPRC 727
+ C + A C
Sbjct: 794 SMQRPCLQYVCVNATASNC 812
>AY058325-1|AAL13554.1| 662|Drosophila melanogaster GH09510p
protein.
Length = 662
Score = 32.3 bits (70), Expect = 0.76
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 57 RRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAM---PVCDTDGRTHANPCHL-VMS 224
R+ C S + ++ C + +DC + + PVC TDGRT+ N C L V S
Sbjct: 194 RKKTCSRSGVSLIKDVRDGCERS---KGSDCKHRCSTEKDPVCGTDGRTYLNRCMLRVQS 250
Query: 225 GR------KMGYWGPC 254
R K+ + GPC
Sbjct: 251 CRVGLAAVKLSHVGPC 266
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 129 CVNTTDCNS---QAAMPVCDTDGRTHANPCHL 215
C +T C + A P C +DGR +A+PC +
Sbjct: 320 CQSTRMCRESCWRVARPTCGSDGRLYASPCKM 351
>AE014296-1453|AAF50418.2| 662|Drosophila melanogaster CG32354-PA
protein.
Length = 662
Score = 32.3 bits (70), Expect = 0.76
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 57 RRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAM---PVCDTDGRTHANPCHL-VMS 224
R+ C S + ++ C + +DC + + PVC TDGRT+ N C L V S
Sbjct: 194 RKKTCSRSGVSLIKDVRDGCERS---KGSDCKHRCSTEKDPVCGTDGRTYLNRCMLRVQS 250
Query: 225 GR------KMGYWGPC 254
R K+ + GPC
Sbjct: 251 CRVGLAAVKLSHVGPC 266
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 129 CVNTTDCNS---QAAMPVCDTDGRTHANPCHL 215
C +T C + A P C +DGR +A+PC +
Sbjct: 320 CQSTRMCRESCWRVARPTCGSDGRLYASPCKM 351
>AE014297-4066|AAF56664.3| 979|Drosophila melanogaster CG6124-PA
protein.
Length = 979
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCN 152
QSP + C RH+ ++N C+ + + CP C+ +C+
Sbjct: 104 QSPGRCI-CSARHLLDKTTNNCIPQCASGCPNGTCITPNNCS 144
>AF273708-1|AAL35411.1| 118|Drosophila melanogaster
PFTAIRE-interacting factor 2 protein.
Length = 118
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +3
Query: 30 SPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPC 209
SPC G C C P + C S T C C C + +P C PC
Sbjct: 35 SPCCGPCCSP--CCGPCCSPCCSPCCTPCCTPCCTPCCKCCTPCCVPCCTPCCTPCCTPC 92
>AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA
protein.
Length = 118
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +3
Query: 30 SPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPC 209
SPC G C C P + C S T C C C + +P C PC
Sbjct: 35 SPCCGPCCSP--CCGPCCSPCCSPCCTPCCTPCCTPCCKCCTPCCVPCCTPCCTPCCTPC 92
>AY242076-1|AAO85264.1| 523|Drosophila melanogaster CG2264A
protein.
Length = 523
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>AY058615-1|AAL13844.1| 613|Drosophila melanogaster LD30894p
protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
protein.
Length = 23015
Score = 29.5 bits (63), Expect = 5.3
Identities = 20/66 (30%), Positives = 24/66 (36%)
Frame = +2
Query: 521 CGANGVTYGSECAAWSEYVSVDYVGPCLAVGYISDQMEPKCTFDRIVCPALKKDDCQGFT 700
CGAN V +C+ EY Y G C + C +R D C G
Sbjct: 16375 CGANAVCQNGQCSCIPEYQGDPYTG-CRP----ECVLNADCPRNRACVRHKCVDPCPGTC 16429
Query: 701 APGACC 718
AP A C
Sbjct: 16430 APNAIC 16435
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +3
Query: 30 SPCAGVTCPRRHVCVPSSNVCLSRLQTSCP-QHVCVNTTDCNSQAAMPVCDTDGRTHANP 206
SP C + C+ S + Q C +C T C +++ PVC NP
Sbjct: 8522 SPKTPEPCQSNNDCIESEACYMGLCQDPCEFAKICAATAKCTAKSHRPVCTCPQGHEGNP 8581
>AE013599-1003|AAM71054.1| 613|Drosophila melanogaster CG2264-PE,
isoform E protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>AE013599-1002|AAM71053.1| 613|Drosophila melanogaster CG2264-PD,
isoform D protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>AE013599-1001|AAM71052.1| 613|Drosophila melanogaster CG2264-PC,
isoform C protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>AE013599-1000|AAF58854.1| 613|Drosophila melanogaster CG2264-PB,
isoform B protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>AE013599-999|AAG22291.1| 613|Drosophila melanogaster CG2264-PA,
isoform A protein.
Length = 613
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PVCDTDGRTHANPCHLV 218
PVC TDG+T+ CHL+
Sbjct: 44 PVCGTDGQTYPTRCHLL 60
>BT003621-1|AAO39624.1| 767|Drosophila melanogaster GH04473p
protein.
Length = 767
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNV---CLSRLQTSCP-QHVCVNTTDCNSQAAMPVCDTDGRT 194
++ C+GV C CV + C++ + CP ++ V+++ + + A VC DG+T
Sbjct: 605 KNSCSGVHCLNGLTCVEDQYLMPHCIA-CRIECPWDNLDVDSSGYDERQA--VCGVDGKT 661
Query: 195 HANPCHLVMSGRKMG------YWGPC 254
+ + C + K+G Y GPC
Sbjct: 662 YRSACDINRMICKIGRSIAVAYPGPC 687
>AF454393-1|AAL51006.1| 705|Drosophila melanogaster follistatin
protein.
Length = 705
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNV---CLSRLQTSCP-QHVCVNTTDCNSQAAMPVCDTDGRT 194
++ C+GV C CV + C++ + CP ++ V+++ + + A VC DG+T
Sbjct: 543 KNSCSGVHCLNGLTCVEDQYLMPHCIA-CRIECPWDNLDVDSSGYDERQA--VCGVDGKT 599
Query: 195 HANPCHLVMSGRKMG------YWGPC 254
+ + C + K+G Y GPC
Sbjct: 600 YRSACDINRMICKIGRSIAVAYPGPC 625
>AE013599-2026|AAF58158.2| 767|Drosophila melanogaster CG33466-PA
protein.
Length = 767
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNV---CLSRLQTSCP-QHVCVNTTDCNSQAAMPVCDTDGRT 194
++ C+GV C CV + C++ + CP ++ V+++ + + A VC DG+T
Sbjct: 605 KNSCSGVHCLNGLTCVEDQYLMPHCIA-CRIECPWDNLDVDSSGYDERQA--VCGVDGKT 661
Query: 195 HANPCHLVMSGRKMG------YWGPC 254
+ + C + K+G Y GPC
Sbjct: 662 YRSACDINRMICKIGRSIAVAYPGPC 687
>D86546-1|BAA13108.1| 2044|Drosophila melanogaster still life type 2
protein.
Length = 2044
Score = 28.7 bits (61), Expect = 9.3
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 21 GVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTD 185
G AG T RR V C L SC C+N CNS +P C D
Sbjct: 479 GATGAGAGATSERRLVICHDCRSCAPLL--SCRNRKCLNAAKCNS---LPRCAAD 528
>BT028855-1|ABI34236.2| 242|Drosophila melanogaster RT01130p
protein.
Length = 242
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 26 PVSMRRSHVSETSRVRALLQ---RMPVSSPNILPSTRLCEYNRLQFASRY 166
PV ++ E R+R L R+ PNI P T+L + + L+ A+ Y
Sbjct: 30 PVQRNAANARERMRMRVLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLY 79
>BT028823-1|ABI34204.2| 242|Drosophila melanogaster RT01030p
protein.
Length = 242
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 26 PVSMRRSHVSETSRVRALLQ---RMPVSSPNILPSTRLCEYNRLQFASRY 166
PV ++ E R+R L R+ PNI P T+L + + L+ A+ Y
Sbjct: 30 PVQRNAANARERMRMRVLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLY 79
>AY118305-1|AAM48334.1| 2061|Drosophila melanogaster GH10341p
protein.
Length = 2061
Score = 28.7 bits (61), Expect = 9.3
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 21 GVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTD 185
G AG T RR V C L SC C+N CNS +P C D
Sbjct: 479 GATGAGAGATSERRLVICHDCRSCAPLL--SCRNRKCLNAAKCNS---LPRCAAD 528
>AJ000729-1|CAA04262.1| 242|Drosophila melanogaster bHLH protein
protein.
Length = 242
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 26 PVSMRRSHVSETSRVRALLQ---RMPVSSPNILPSTRLCEYNRLQFASRY 166
PV ++ E R+R L R+ PNI P T+L + + L+ A+ Y
Sbjct: 30 PVQRNAANARERMRMRVLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLY 79
>AE014296-987|AAF50756.3| 2052|Drosophila melanogaster CG5406-PA,
isoform A protein.
Length = 2052
Score = 28.7 bits (61), Expect = 9.3
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 21 GVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTD 185
G AG T RR V C L SC C+N CNS +P C D
Sbjct: 479 GATGAGAGATSERRLVICHDCRSCAPLL--SCRNRKCLNAAKCNS---LPRCAAD 528
>AE014296-986|AAS65075.1| 2061|Drosophila melanogaster CG5406-PC,
isoform C protein.
Length = 2061
Score = 28.7 bits (61), Expect = 9.3
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 21 GVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTD 185
G AG T RR V C L SC C+N CNS +P C D
Sbjct: 479 GATGAGAGATSERRLVICHDCRSCAPLL--SCRNRKCLNAAKCNS---LPRCAAD 528
>AE014134-1954|AAF53012.2| 777|Drosophila melanogaster CG31869-PA
protein.
Length = 777
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +2
Query: 641 CTFDRIVCPAL---KKDDCQGFTAPGACCPR 724
C IVC + ++DDC PG CCP+
Sbjct: 199 CKGGEIVCSPVTCYRRDDCMPKYVPGRCCPQ 229
>AE013599-2555|AAF57795.1| 242|Drosophila melanogaster CG5005-PA
protein.
Length = 242
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 26 PVSMRRSHVSETSRVRALLQ---RMPVSSPNILPSTRLCEYNRLQFASRY 166
PV ++ E R+R L R+ PNI P T+L + + L+ A+ Y
Sbjct: 30 PVQRNAANARERMRMRVLSSAYGRLKTKLPNIPPDTKLSKLDTLRLATLY 79
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,802,171
Number of Sequences: 53049
Number of extensions: 846876
Number of successful extensions: 3025
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3019
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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